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Record W4286213099 · doi:10.3390/antibiotics11070974

Antimicrobial Resistance in the Environment: Towards Elucidating the Roles of Bioaerosols in Transmission and Detection of Antibacterial Resistance Genes

2022· article· en· W4286213099 on OpenAlexafffundabout
Paul B. L. George, Florent Rossi, Magali-Wen St–Germain, Pierre Amato, Thierry Badard, Michel G. Bergeron, Maurice Boissinot, Steve J. Charette, Brenda L. Coleman, Jacques Corbeil, Alexander I. Culley, Marie‐Lou Gaucher, Matthieu Girard, Stéphane Godbout, Shelley Kirychuk, André Marette, Allison McGeer, Patrick T. O’Shaughnessy, E. Jane Parmley, Serge Simard, Richard J. Reid‐Smith, Edward Topp, Luc Trudel, Maosheng Yao, Patrick Brassard, Anne‐Marie Delort, Araceli D. Larios, Valérie Létourneau, Valérie E. Paquet, Marie-Hélène Pedneau, Émilie Pic, Brooke Thompson, Marc Veillette, Mary Thaler, Ilaria Scapino, Maria Lebeuf, Mahsa Baghdadi, Alejandra Castillo Toro, Amélia Bélanger Cayouette, Marie-Julie Dubois, Alicia F. Durocher, Sarah B. Girard, Andrea Katherín Carranza Diaz, Asmaâ Khalloufi, Samantha Leclerc, Joanie Lemieux, Manuel Pérez Maldonado, Geneviève Pilon, Colleen Murphy, Charly A. Notling, Daniel Ofori-Darko, Juliette Provencher, Annabelle Richer-Fortin, Nathalie Turgeon, Caroline Duchaine

Bibliographic record

VenueAntibiotics · 2022
Typearticle
Languageen
FieldEnvironmental Science
TopicPharmaceutical and Antibiotic Environmental Impacts
Canadian institutionsAgriculture and Agri-Food CanadaUniversity of TorontoWestern UniversityUniversity of GuelphPublic Health OntarioInstitut universitaire de cardiologie et de pneumologie de QuébecCentre de Géomatique du QuébecPublic Health Agency of CanadaInstitut de Recherche et de Développement en AgroenvironnementUniversity of SaskatchewanUniversité de MontréalUniversité Laval
FundersNational Institute of Environmental Health SciencesNatural Resources CanadaSentinelle Nord, Université LavalNatural Sciences and Engineering Research Council of CanadaInstitut de Recherche Robert-Sauvé en Santé et en Sécurité du TravailParks CanadaFonds de Recherche du Québec - SantéCompute Canada
KeywordsIndoor bioaerosolAntibiotic resistanceResistance (ecology)AgricultureAirborne transmissionBiotechnologyOne HealthResistomePublic healthTransmission (telecommunications)Multidisciplinary approachEnvironmental biotechnologyEnvironmental healthEnvironmental planningBiologyInfectious disease (medical specialty)MedicineMicrobial ecologyBacteriaAntibioticsEcologyDiseaseEnvironmental scienceMicrobiologyEngineeringGeneticsSociologyIntegronSocial scienceCoronavirus disease 2019 (COVID-19)

Abstract

fetched live from OpenAlex

Antimicrobial resistance (AMR) is continuing to grow across the world. Though often thought of as a mostly public health issue, AMR is also a major agricultural and environmental problem. As such, many researchers refer to it as the preeminent One Health issue. Aerial transport of antimicrobial-resistant bacteria via bioaerosols is still poorly understood. Recent work has highlighted the presence of antibiotic resistance genes in bioaerosols. Emissions of AMR bacteria and genes have been detected from various sources, including wastewater treatment plants, hospitals, and agricultural practices; however, their impacts on the broader environment are poorly understood. Contextualizing the roles of bioaerosols in the dissemination of AMR necessitates a multidisciplinary approach. Environmental factors, industrial and medical practices, as well as ecological principles influence the aerial dissemination of resistant bacteria. This article introduces an ongoing project assessing the presence and fate of AMR in bioaerosols across Canada. Its various sub-studies include the assessment of the emissions of antibiotic resistance genes from many agricultural practices, their long-distance transport, new integrative methods of assessment, and the creation of dissemination models over short and long distances. Results from sub-studies are beginning to be published. Consequently, this paper explains the background behind the development of the various sub-studies and highlight their shared aspects.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.214
Threshold uncertainty score0.363

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.240
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations17
Published2022
Admission routes3
Has abstractyes

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