Diagnosis of Paratuberculosis in Histopathological Images Based on Explainable Artificial Intelligence and Deep Learning
Bibliographic record
Abstract
Artificial intelligence holds great promise in medical imaging, especially histopathological imaging. However, artificial intelligence algorithms cannot fully explain the thought processes during decision-making. This situation has brought the problem of explainability, i.e., the black box problem, of artificial intelligence applications to the agenda: an algorithm simply responds without stating the reasons for the given images. To overcome the problem and improve the explainability, explainable artificial intelligence (XAI) has come to the fore, and piqued the interest of many researchers. Against this backdrop, this study examines a new and original dataset using the deep learning algorithm, and visualizes the output with gradient-weighted class activation mapping (Grad-CAM), one of the XAI applications. Afterwards, a detailed questionnaire survey was conducted with the pathologists on these images. Both the decision-making processes and the explanations were verified, and the accuracy of the output was tested. The research results greatly help pathologists in the diagnosis of paratuberculosis.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.006 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.001 |
| Bibliometrics | 0.002 | 0.001 |
| Science and technology studies | 0.000 | 0.001 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".