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Record W4289108204 · doi:10.3929/ethz-b-000315358

Minimum Information about an Uncultivated Virus Genome (MIUViG)

2018· article· en· W4289108204 on OpenAlexaff
Simon Roux, Evelien M. Adriaenssens, Bas E. Dutilh, Eugene V. Koonin, Andrew M. Kropinski, Mart Krupovìč, Jens H. Kuhn, Rob Lavigne, Arvind Varsani, Clara Amid, Ramy K. Aziz, Seth R. Bordenstein, Peer Bork, Mya Breitbart, Christelle Desnues, Melissa B. Duhaime, Joanne Emerson, François Enault, Jed A. Fuhrman, Pascal Hingamp, Philip Hugenholtz, Bonnie L. Hurwitz, Jessica Labonté, Kyung-Bum Lee, Rex R. Malmstrom, Ilene Karsch‐Mizrachi, Hiroyuki Ogata, David Páez-Espino, Marie‐Agnès Petit, Catherine Putonti, Thomas Rattei, Francisco Rodríguez‐Valera, Karyna Rosario, Lynn M. Schriml, Frederik Schulz, Grieg F. Steward, Shinichi Sunagawa, Curtis A. Suttle, Ben Temperton, Susannah G. Tringe, Nicole S. Webster, Katrine Whiteson, Steven W. Wilhelm, Tanja Woyke, Kelly Wrighton, Pelin Yilmaz, Mark Young, Natalya Yutin, Lisa Zeigler Allen, Nikos C. Kyrpides, Emiley A. Eloe‐Fadrosh

Bibliographic record

VenueRepository for Publications and Research Data (ETH Zurich) · 2018
Typearticle
Languageen
FieldEnvironmental Science
TopicBacteriophages and microbial interactions
Canadian institutionsUniversity of British ColumbiaUniversity of Guelph
FundersLawrence Berkeley National LaboratoryU.S. National Library of MedicineNational Institute of Allergy and Infectious DiseasesNational Institutes of HealthKU LeuvenNederlandse Organisatie voor Wetenschappelijk OnderzoekBattelleAgence Nationale de la RechercheCenter for Dark Energy Biosphere InvestigationsNatural Environment Research CouncilEuropean Molecular Biology LaboratoryU.S. Department of EnergyCairo UniversityGordon and Betty Moore FoundationSight Research UKVanderbilt UniversityNational Science Foundation
KeywordsGenomeBiologyComputational biologyVirologyGeneticsGene

Abstract

fetched live from OpenAlex

We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum Information about an Uncultivated Virus Genome (MIUViG) standards were developed within the Genomic Standards Consortium framework and include virus origin, genome quality, genome annotation, taxonomic classification, biogeographic distribution and in silico host prediction. Community-wide adoption of MIUViG standards, which complement the Minimum Information about a Single Amplified Genome (MISAG) and Metagenome-Assembled Genome (MIMAG) standards for uncultivated bacteria and archaea, will improve the reporting of uncultivated virus genomes in public databases. In turn, this should enable more robust comparative studies and a systematic exploration of the global virosphere.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesScience and technology studies
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.874
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0010.004
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.085
GPT teacher head0.380
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

Explore more

Same venueRepository for Publications and Research Data (ETH Zurich)Same topicBacteriophages and microbial interactionsFrench-language works237,207