ARC-MOF: A Diverse Database of Metal-Organic Frameworks with DFT-Derived Partial Atomic Charges and Descriptors for Machine Learning
Bibliographic record
Abstract
Metal-organic frameworks (MOFs) are a class of crystalline materials composed of metal nodes or clusters connected via semi-rigid organic linkers. Owing to their high surface area, porosity, and tunability, MOFs have received significant attention for numerous applications such as gas separation and storage. Atomistic simulations and data-driven methods (e.g., machine learning) have been successfully employed to screen large databases and successfully develop new experimentally synthesized and validated MOFs for CO2 capture. To enable data-driven materials discovery for any application, the first (and arguably most crucial) step is database curation. This work introduces the ab initio REPEAT charge MOF (ARC-MOF) database. This is a database of ~280,000 MOFs which have been either experimentally characterized or computationally generated, spanning all publicly available MOF databases. A key feature of ARC-MOF is that it contains DFT-derived electrostatic potential fitted partial atomic charges for each MOF. Additionally, ARC-MOF contains pre-computed descriptors for out-of-the-box machine learning applications. An in-depth analysis of the diversity of ARC-MOF with respect to the currently mapped design space of MOFs was performed – a critical, yet commonly overlooked aspect of previously reported MOF databases. Using this analysis, balanced subsets from ARC-MOF for various machine learning purposes have been identified. Other chemical and geometric diversity analyses are presented, with an analysis on the effect of charge assignment method on atomistic simulation of gas uptake in MOFs.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.003 |
| Meta-epidemiology (narrow) | 0.002 | 0.000 |
| Meta-epidemiology (broad) | 0.002 | 0.002 |
| Bibliometrics | 0.003 | 0.004 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.004 | 0.001 |
| Research integrity | 0.002 | 0.001 |
| Insufficient payload (model declined to judge) | 0.012 | 0.004 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".