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Record W4289278087 · doi:10.21203/rs.3.rs-1902466/v1

The NORMAN Suspect List Exchange (NORMAN-SLE): Facilitating European and Worldwide Collaboration on Suspect Screening in High Resolution Mass Spectrometry

2022· preprint· en· W4289278087 on OpenAlexafffund
Hiba Mohammed Taha, Reza Aalizadeh, ‪Nikiforos Alygizakis, Jean-Philippe Antignac, Hans Peter H. Arp, Richard Bade, Nancy Baker, Lidia Belova, Lubertus Bijlsma, Evan Bolton, Werner Brack, Alberto Celma, Wen‐Ling Chen, Tiejun Cheng, Parviel Chirsir, Ľuboš Čirka, Lisa A. D’Agostino, Yannick Djoumbou-Feunang, Valeria Dulio, Stellan Fischer, Pablo Gago-Ferrero, Aikaterini Galani, Birgit Geueke, Natalia Głowacka, Juliane Glüge, Ksenia J. Groh, Sylvia Grosse, Peter Haglund, Pertti J. Hakkinen, Sarah E. Hale, Félix Hernández, Elisabeth M.‐L. Janssen, Tim Jonkers, Karin Kiefer, Michal Kirchner, Jan Koschorreck, Martin Krauß, Jessy Krier, M.H. Lamoree, Marion Letzel, Thomas Letzel, Qingliang Li, James L. Little, Yanna Liu, David M. Lunderberg, Jonathan W. Martin, Andrew D. McEachran, John A. McLean, Christiane Meier, Jeroen Meijer, Frank Menger, Carla Merino, Jane Muncke, Matthias Muschket, Michael Neumann, Vanessa Neveu, Kelsey Ng, Herbert Oberacher, Jake O’Brien, Peter Oswald, Martina Oswaldova, Jaqueline A. Picache, Cristina Postigo, Noelia Ramírez, Thorsten Reemtsma, Justin B. Renaud, Paweł Rostkowski, Heinz Rüdel, Reza M. Salek, Saer Samanipour, Martin Scheringer, Ivo Schliebner, W. Schulz, Tobias Schulze, Manfred Sengl, Benjamin A. Shoemaker, Kerry Sims, Heinz Singer, Randolph R. Singh, Mark W. Sumarah, Paul Thiessen, Kevin V. Thomas, Sònia Torres, Xenia Trier, Annemarie P. van Wezel, Roel Vermeulen, Jelle Vlaanderen, Peter C. von der Ohe, Zhanyun Wang, Antony Williams, Egon Willighagen, David S. Wishart, Jian Zhang, Νikolaos S. Τhomaidis, Juliane Hollender, Jaroslav Slobodnı́k, Emma Schymanski

Bibliographic record

VenueResearch Square · 2022
Typepreprint
Languageen
FieldChemistry
TopicAnalytical chemistry methods development
Canadian institutionsUniversity of AlbertaAgriculture and Agri-Food Canada
FundersFP7 Food, Agriculture and Fisheries, BiotechnologyEuropean Social FundU.S. National Library of MedicineNational Institute of General Medical SciencesNational Cancer InstituteBundesministerium für Umwelt, Naturschutz, nukleare Sicherheit und VerbraucherschutzAgencia Estatal de InvestigaciónMAVA FoundationInstituto de Salud Carlos IIINational Health and Medical Research CouncilSveriges LantbruksuniversitetNational Institutes of HealthU.S. Environmental Protection AgencyVlaamse regeringUniversity of QueenslandEnvironmental Protection Administration, Executive Yuan, R.O.C. TaiwanGeneralitat ValencianaDanmarks Tekniske UniversitetNederlandse Organisatie voor Wetenschappelijk OnderzoekCanadian Institutes of Health ResearchFonds Wetenschappelijk OnderzoekEuropean Regional Development FundBundesministerium für Bildung und ForschungNational Natural Science Foundation of ChinaNational Science FoundationDeutsche ForschungsgemeinschaftEuropean CommissionGenome CanadaAustralian Research CouncilVanderbilt UniversityFonds National de la Recherche Luxembourg
KeywordsSuspectComputer scienceIdentifierResource (disambiguation)Library scienceWorld Wide WebPolitical scienceLaw

Abstract

fetched live from OpenAlex

<title>Abstract</title> Background: The NORMAN Association (https://www.norman-network.com/) initiated the NORMAN Suspect List Exchange (NORMAN-SLE; https://www.norman-network.com/nds/SLE/) in 2015, following the NORMAN collaborative trial on non-target screening of environmental water samples by mass spectrometry. Since then, this exchange of information on chemicals that are expected to occur in the environment, along with the accompanying expert knowledge and references, has become a valuable knowledge base for “suspect screening” lists. The NORMAN-SLE now serves as a FAIR (Findable, Accessible, Interoperable, Reusable) chemical information resource worldwide. Results: The NORMAN-SLE contains 99 separate suspect list collections (as of May 2022) from over 70 contributors around the world, totalling over 100,000 unique substances. The substance classes include per-and polyfluoroalkyl substances (PFAS), pharmaceuticals, pesticides, natural toxins, high production volume substances covered under the European REACH regulation (EC: 1272/2008), priority contaminants of emerging concern (CECs) and regulatory lists from NORMAN partners. Several lists focus on transformation products (TPs) and complex features detected in the environment with various levels of provenance and structural information. Each list is available for separate download. The merged, curated collection is also available as the NORMAN Substance Database (NORMAN SusDat). Both the NORMAN-SLE and NORMAN SusDat are integrated within the NORMAN Database System (NDS). The individual NORMAN-SLE lists receive digital object identifiers (DOIs) and traceable versioning via a Zenodo community (https://zenodo.org/communities/norman-sle), with a total of &gt;40,000 unique views, &gt;50,000 unique downloads and 40 citations (May 2022). NORMAN-SLE content is progressively integrated into large open chemical databases such as PubChem (https://pubchem.ncbi.nlm.nih.gov/) and the US EPA’s CompTox Chemicals Dashboard (https://comptox.epa.gov/dashboard/), enabling further access to these lists, along with the additional functionality and calculated properties these resources offer. PubChem has also integrated significant annotation content from the NORMAN-SLE, including a classification browser (https://pubchem.ncbi.nlm.nih.gov/classification/#hid=101). Conclusions: The NORMAN-SLE offers a specialized service for hosting suspect screening lists of relevance for the environmental community in an open, FAIR manner that allows integration with other major chemical resources. These efforts foster the exchange of information between scientists and regulators, supporting the paradigm shift to the “one chemical, one assessment” approach. New submissions are welcome via the contacts provided on the NORMAN-SLE website (https://www.norman-network.com/nds/SLE/).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.010
metaresearch head score (Gemma)0.004
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Research integrity, Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.360
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0100.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.003
Research integrity0.0000.005
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.061
GPT teacher head0.375
Teacher spread0.315 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2022
Admission routes2
Has abstractyes

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