Technical note: <i>rtdsm</i>—An open‐source software for radiotherapy dose‐surface map generation and analysis
Bibliographic record
Abstract
BACKGROUND: Dose-outcome studies in radiation oncology have historically excluded spatial information due to dose-volume histograms being the most dominant source of dosimetric information. In recent years, dose-surface maps (DSMs) have become increasingly popular for characterization of spatial dose distributions and identification of radiosensitive subregions for hollow organs. However, methodological variations and lack of open-source, publicly offered code-sharing between research groups have limited reproducibility and wider adoption. PURPOSE: This paper presents rtdsm, an open-source software for DSM calculation with the intent to improve the reproducibility of and the access to DSM-based research in medical physics and radiation oncology. METHODS: A literature review was conducted to identify essential functionalities and prevailing calculation approaches to guide development. The described software has been designed to calculate DSMs from DICOM data with a high degree of user customizability and to facilitate DSM feature analysis. Core functionalities include DSM calculation, equivalent dose conversions, common DSM feature extraction, and simple DSM accumulation. RESULTS: A number of use cases were used to qualitatively and quantitatively demonstrate the use and usefulness of rtdsm. Specifically, two DSM slicing methods, planar and noncoplanar, were implemented and tested, and the effects of method choice on output DSMs were demonstrated. An example comparison of DSMs from two different treatments was used to highlight the use cases of various built-in analysis functions for equivalent dose conversion and DSM feature extraction. CONCLUSIONS: We developed and implemented rtdsm as a standalone software that provides all essential functionalities required to perform a DSM-based study. It has been made freely accessible under an open-source license on Github to encourage collaboration and community use.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.009 | 0.037 |
| Meta-epidemiology (narrow) | 0.002 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.002 |
| Bibliometrics | 0.004 | 0.002 |
| Science and technology studies | 0.001 | 0.001 |
| Scholarly communication | 0.002 | 0.002 |
| Open science | 0.004 | 0.004 |
| Research integrity | 0.001 | 0.003 |
| Insufficient payload (model declined to judge) | 0.073 | 0.047 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".