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Record W4295413186 · doi:10.1016/j.isci.2022.105101

A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data

2022· article· en· W4295413186 on OpenAlexaff
Meghan A. Balk, John Deck, Kitty F. Emery, Ramona Walls, Dana M. Reuter, Raphael LaFrance, Joaquín Arroyo‐Cabrales, Paul Z. Barrett, Jessica L. Blois, Arianne Boileau, Laura Brenskelle, Nicole R. Cannarozzi, J. Alberto Cruz, Liliana M. Dávalos, Noé U. de la Sancha, Prasiddhi Gyawali, Maggie M. Hantak, Samantha S. B. Hopkins, Brooks A. Kohli, Jessica N. King, Michelle S. Koo, A. Michelle Lawing, Helena Machado, Samantha M. McCrane, Bryan S. McLean, Michèle E. Morgan, Suzanne E. Pilaar Birch, Denné Reed, Elizabeth J. Reitz, Neeka Sewnath, Nathan S. Upham, Amelia Villaseñor, Laurel R. Yohe, Edward Davis, Robert Guralnick

Bibliographic record

VenueiScience · 2022
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsSimon Fraser University
FundersNational Sleep FoundationNational Science Foundation
KeywordsTraitDiscoverabilityMetadataExtant taxonData scienceEcologyMacroecologyComputer scienceBiologyEvolutionary biologyBiodiversityWorld Wide Web

Abstract

fetched live from OpenAlex

Understanding variation of traits within and among species through time and across space is central to many questions in biology. Many resources assemble species-level trait data, but the data and metadata underlying those trait measurements are often not reported. Here, we introduce FuTRES (Functional Trait Resource for Environmental Studies; pronounced few-tress), an online datastore and community resource for individual-level trait reporting that utilizes a semantic framework. FuTRES already stores millions of trait measurements for paleobiological, zooarchaeological, and modern specimens, with a current focus on mammals. We compare dynamically derived extant mammal species' body size measurements in FuTRES with summary values from other compilations, highlighting potential issues with simply reporting a single mean estimate. We then show that individual-level data improve estimates of body mass-including uncertainty-for zooarchaeological specimens. FuTRES facilitates trait data integration and discoverability, accelerating new research agendas, especially scaling from intra- to interspecific trait variability.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.923
Threshold uncertainty score0.998

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.003
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.178
GPT teacher head0.313
Teacher spread0.135 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations19
Published2022
Admission routes1
Has abstractyes

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