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Edge-preserving Image Synthesis for Unsupervised Domain Adaptation in Medical Image Segmentation

2022· article· en· W4295469822 on OpenAlexafffund
Thong Vo, Naimul Khan

Bibliographic record

Venue2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) · 2022
Typearticle
Languageen
FieldComputer Science
TopicDomain Adaptation and Few-Shot Learning
Canadian institutionsToronto Metropolitan University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsComputer scienceSegmentationArtificial intelligenceDomain (mathematical analysis)Adaptation (eye)Domain adaptationRelevance (law)Pattern recognition (psychology)Enhanced Data Rates for GSM EvolutionImage (mathematics)Image segmentationLabeled dataProcess (computing)Transformation (genetics)Computer visionMathematics

Abstract

fetched live from OpenAlex

Domain Adaptation is a technique to address the lack of massive amounts of labeled data in different application domains. Unsupervised domain adaptation is the process of adapting a model to an unseen target dataset using solely labeled source data and unlabeled target domain data. Though many image-spaces domain adaptation methods have been proposed to capture pixel-level domain-shift, such techniques may fail to maintain high-level semantic information for the segmentation task. For the case of biomedical images, fine details such as blood vessels can be lost during the image transformation operations between domains. In this work, we propose a model that adapts between domains using cycle-consistent loss while maintaining edge details of the original images by enforcing an edge-based loss during the adaptation process. We demonstrate the effectiveness of our algorithm by comparing it to other approaches on two eye fundus vessels segmentation datasets. We achieve 3.1 % increment in Dice score compared to the SOTA and ∼ 7.02% increment compared to a vanilla CycleGAN implementation. Clinical relevance- The proposed adaptation scheme can provide better performance on unseen data for semantic segmentation, which is widely applied in computer-aided diagnosis. Such robust performance can reduce the reliance of a large amount of labeled data, which is a common problem in the medical domain.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.783
Threshold uncertainty score0.703

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0020.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.039
GPT teacher head0.307
Teacher spread0.268 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2022
Admission routes2
Has abstractyes

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