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Record W4297179926 · doi:10.1016/j.imu.2022.101091

Multi-view parallel vertebra segmentation and identification on computed tomography (CT) images

2022· article· en· W4297179926 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueInformatics in Medicine Unlocked · 2022
Typearticle
Languageen
FieldEngineering
TopicMedical Imaging and Analysis
Canadian institutionsMemorial University of NewfoundlandSimon Fraser University
FundersAlzheimer's Disease Research Center, Wake Forest School of MedicineCanadian Institutes of Health ResearchClaude Pepper Older Americans Independence Center, Wake Forest School of MedicineMichael Smith Health Research BCNatural Sciences and Engineering Research Council of CanadaWake Forest School of MedicineCompute Canada
KeywordsArtificial intelligenceSegmentationVertebraComputer scienceConvolutional neural networkPixelPattern recognition (psychology)Sagittal planeCoronal planeConcatenation (mathematics)Identification (biology)Computer visionMathematicsMedicineAnatomy

Abstract

fetched live from OpenAlex

Vertebra segmentation and identification is the crucial step for automatic spine analysis. Manual or semi-automatic segmentation and identification is a cumbersome approach used conventionally. This paper proposes an automatic method for accurate pixel-level labeling of vertebrae on CT images. The algorithm consists of two main steps: in the first step, a pixel-link convolutional neural network is trained to generate a binary mask for the vertebral column; and in the second step, a multi-label dilated residual network identifies the labels for each vertebra. The proposed model is evaluated on the VerSe-dataset which contains 374 CT scans. This includes scans with a variety of field-of-views and healthy/disease cases acquired from multiple scanners. The model is trained and evaluated on 2D coronal and sagittal slices extracted from the CT volume. Average dice scores of 0.89 and 0.90 were achieved on two test sets released as public and hidden test sets for VerSe-dataset. The mean pixel accuracy of the predicted segmentation maps for vertebra regions are 0.72–0.86 and 0.68–0.85 for test set 1 and test 2, respectively.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.556
Threshold uncertainty score0.440

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.263
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it