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Record W4298120149 · doi:10.1101/2022.09.29.509951

Clarifying space use concepts in ecology: range vs. occurrence distributions

2022· preprint· en· W4298120149 on OpenAlexafffund
Jesse M. Alston, Christen H. Fleming, Michael Noonan, Marlee A. Tucker, Inês Silva, Cody Folta, Thomas S. Akre, Abdullahi H. Ali, Jerrold L. Belant, Dean E. Beyer, Niels Blaum, Katrin Böhning‐Gaese, Rogério Cunha de Paula, Jasja Dekker, Jonathan Drescher‐Lehman, Nina Farwig, Claudia Fichtel, Christina Fischer, Adam T. Ford, René Janssen, Florian Jeltsch, Peter M. Kappeler, Scott LaPoint, A. Catherine Markham, Emília Patrícia Medici, Ronaldo Gonçalves Morato, Ran Nathan, Kirk A. Olson, Bruce D. Patterson, Tyler R. Petroelje, Emiliano Esterci Ramalho, Sascha Rösner, Luiz Gustavo Oliveira Santos, Dana G. Schabo, Nuria Selva, Agnieszka Sergiel, Orr Spiegel, Wiebke Ullmann, Filip Zięba, Tomasz Zwijacz‐Kozica, George Wittemyer, William F. Fagan, Thomas Mueller, Justin M. Calabrese

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2022
Typepreprint
Languageen
FieldEnvironmental Science
TopicWildlife Ecology and Conservation
Canadian institutionsUniversity of British Columbia, Okanagan CampusUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of CanadaIsrael Institute for Biological ResearchSächsisches Staatsministerium für Wissenschaft und KunstBundesministerium für Bildung und ForschungDeutsche ForschungsgemeinschaftNational Science Foundation
KeywordsEstimatorHome rangeRange (aeronautics)EcologyKernel density estimationMeasure (data warehouse)EconometricsComputer scienceInferenceStatistical inferenceStatisticsGeographyData scienceMathematicsData miningArtificial intelligenceHabitatBiology

Abstract

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Abstract Quantifying animal movements is necessary for answering a wide array of research questions in ecology and conservation biology. Consequently, ecologists have made considerable efforts to identify the best way to estimate an animal’s home range, and many methods of estimating home ranges have arisen over the past half century. Most of these methods fall into two distinct categories of estimators that have only recently been described in statistical detail: those that measure range distributions (methods such as Kernel Density Estimation that quantify the long-run behavior of a movement process that features restricted space use) and those that measure occurrence distributions (methods such as Brownian Bridge Movement Models and the Correlated Random Walk Library that quantify uncertainty in an animal movement path during a specific period of observation). In this paper, we use theory, simulations, and empirical analysis to demonstrate the importance of applying these two classes of space use estimators appropriately and distinctly. Conflating range and occurrence distributions can have serious consequences for ecological inference and conservation practice. For example, in most situations, home-range estimates quantified using occurrence estimators are too small, and this problem is exacerbated by ongoing improvements in tracking technology that enable more frequent and more accurate data on animal movements. We encourage researchers to use range estimators to estimate the area of home ranges and occurrence estimators to answer other questions in movement ecology, such as when and where an animal crosses a linear feature, visits a location of interest, or interacts with other animals. Open Research Statement Tracking data on Aepyceros melampus, Beatragus hunteri, Bycanistes bucinator, Cerdocyon thous, Eulemur rufifrons, Glyptemys insculpta, Gyps coprotheres, Madoqua guentheri, Ovis canadensis, Propithecus verreauxi, Sus scrofa , and Ursus arctos are publicly archived in the Dryad repository (Noonan et al. 2018; https://doi.org/10.5061/dryad.v5051j2 ), as are data from Procapra gutturosa (Fleming et al. 2014a; https://doi.org/10.5061/dryad.45157 ). Data on Panthera onca were taken from (Morato et al. 2018). Additional data are publicly archived in the Movebank repository under the following identifiers: Canis latrans , 8159699; Canis lupus , 8159399; Chrysocyon brachyurus , 18156143; Felis silvestris , 40386102; Gyps africanus , 2919708; Lepus europaeus , 25727477; Martes pennanti , 2964494; Panthera leo , 220229; Papio cynocephalus , 222027; Syncerus caffer , 1764627; Tapirus terrestris , 443607536; Torgos tracheliotus , 2919708; and Ursus americanus , 8170674.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.001
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.239
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations35
Published2022
Admission routes2
Has abstractyes

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