MétaCan
Menu
Back to cohort
Record W4299789816 · doi:10.17615/f06s-ay68

Genome-Wide Meta-Analysis Identifies Regions on 7p21 (AHR) and 15q24 (CYP1A2) As Determinants of Habitual Caffeine Consumption

2020· article· en· W4299789816 on OpenAlexfundno aff
Rob M. van Dam, Jennifer A. Nettleton, David Couper, Maria Teresa Landi, Debra T. Silverman, Gary C. Curhan, Marilyn C. Cornelis, Rachael Z. Stolzenberg‐Solomon, Stephen J. Chanock, Preetha Rajaraman, Kevin B. Jacobs, Gerardo Heiss, Peter Kraft, Sonja I. Berndt, David J. Hunter, Nina P. Paynter, Kai Yu, Neil E. Caporaso, Keri L. Monda, Eric B. Rimm, Elizabeth M. Azzato, Nathaniel Rothman, Nilanjan Chatterjee, Frank B. Hu, Eric Boerwinkle, Majken K. Jensen, Meredith Yeager, Mark P. Purdue, Siiri Bennett, Daniel I. Chasman, Amy F. Subar, Lynda M. Rose

Bibliographic record

VenueUNC Libraries · 2020
Typearticle
Languageen
FieldMedicine
TopicCoffee research and impacts
Canadian institutionsnot available
FundersNational Institute of Dental and Craniofacial ResearchNational Institute on Drug AbuseNational Cancer InstituteNational Institute on Alcohol Abuse and AlcoholismCanadian Institutes of Health ResearchDivision of Cancer Prevention, National Cancer InstituteFondation LeducqBroad InstituteNational Institute of Diabetes and Digestive and Kidney DiseasesJohns Hopkins UniversityAmgenDonald W. Reynolds FoundationNational Heart, Lung, and Blood InstituteNational Institutes of HealthU.S. Department of Health and Human Services
KeywordsCYP1A2Consumption (sociology)Meta-analysisCaffeineGenomeGeneticsEconomicsBiologyEconometricsGeneInternal medicineMedicineEndocrinology

Abstract

fetched live from OpenAlex

We report the first genome-wide association study of habitual caffeine intake. We included 47,341 individuals of European descent based on five population-based studies within the United States. In a meta-analysis adjusted for age, sex, smoking, and eigenvectors of population variation, two loci achieved genome-wide significance: 7p21 (P = 2.4×10−19), near AHR, and 15q24 (P = 5.2×10−14), between CYP1A1 and CYP1A2. Both the AHR and CYP1A2 genes are biologically plausible candidates as CYP1A2 metabolizes caffeine and AHR regulates CYP1A2.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.088
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.153
GPT teacher head0.337
Teacher spread0.183 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

Explore more

Same venueUNC LibrariesSame topicCoffee research and impactsFrench-language works237,207