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Record W4304606796 · doi:10.1101/2022.10.11.511777

The oomycete MAMP, arachidonic acid, and an <i>Ascophyllum nodosum</i> -derived plant biostimulant induce defense metabolome remodeling in tomato

2022· preprint· en· W4304606796 on OpenAlexaff
Domonique C. Lewis, Timo van der Zwan, Andrew Richards, Holly Little, Gitta Coaker, Richard M. Bostock

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2022
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Growth Enhancement Techniques
Canadian institutionsAcadian Seaplants (Canada)
Fundersnot available
KeywordsMetabolomeOomyceteMetabolomicsBiologyArachidonic acidTranscriptomeHydroxycinnamic acidLipidomicsOxylipinBiochemistryJasmonic acidPlant defense against herbivoryMetabolic pathwayMetaboliteExudateSecondary metabolismMetabolismBotanyBiosynthesisGene

Abstract

fetched live from OpenAlex

Abstract Arachidonic acid (AA) is an oomycete-derived MAMP capable of eliciting robust defense responses and inducing resistance in plants. Similarly, extract (ANE) from the brown seaweed Ascophylum nodosum , a plant biostimulant that contains AA, can also prime plants for defense against pathogen challenge. A previous parallel study comparing the transcriptomes of AA and ANE root-treated tomato demonstrated significant overlap in transcriptional profiles, a shared induced resistance phenotype, and changes in accumulation of various defense-related phytohormones. In this work, untargeted metabolomic analysis via liquid chromatography-mass spectrometry was conducted to investigate the local and systemic metabolome-wide remodeling events elicited by AA- and ANE-root treatment in tomato. Our study demonstrated AA and ANE’s capacity to locally and systemically alter the metabolome of tomato with enrichment of chemical classes and accumulation of metabolites associated with defense-related secondary metabolism. AA and ANE root-treated plants showed enrichment of fatty acyl-glycosides and strong modulation of hydroxycinnamic acids and derivatives. Identification of specific metabolites whose accumulation was affected by AA and ANE treatment revealed shared metabolic changes related to ligno-suberin biosynthesis and the synthesis of phenolic compounds. This study highlights the extensive local and systemic metabolic changes in tomato induced by treatment with a fatty acid MAMP and a seaweed-derived plant biostimulant with implications for induced resistance and crop improvement.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.219
Teacher spread0.199 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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