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Ensemble learning for the detection of pli-de-passages in the superior temporal sulcus

2022· article· en· W4310544637 on OpenAlexaff
Tianqi Song, Clémentine Bodin, Olivier Coulon

Bibliographic record

VenueNeuroImage · 2022
Typearticle
Languageen
FieldNeuroscience
TopicNeural dynamics and brain function
Canadian institutionsMcGill UniversityCentre for Research on Brain Language and Music
FundersNational Institute of Mental HealthMcDonnell Center for Systems NeuroscienceChina Scholarship CouncilNational Institutes of HealthNIH Blueprint for Neuroscience ResearchAgence Nationale de la RechercheFondation Aix-Marseille Universite
KeywordsSulcusArtificial intelligencePattern recognition (psychology)Computer scienceRobustness (evolution)Computer visionNeurosciencePsychologyBiology

Abstract

fetched live from OpenAlex

The surface of the cerebral cortex is very convoluted, with a large number of folds, the cortical sulci. These folds are extremely variable from one individual to another, and this large variability is a problem for many applications in neuroscience and brain imaging. In particular, sulcal geometry (shape) and sulcal topology (branches, number of pieces) are very variable. "Plis de passages" (PPs) or "annectant gyri" can explain part of the topological variability, namely why sulci have a variable number of pieces across subjects. The concept of PPs was first introduced by Gratiolet (1854) to describe transverse gyri that interconnect both sides of a sulcus, that are frequently buried in the depth of sulci, and that are sometimes apparent on the cortical surface, hence seemingly interrupting the course of sulci and separating them in several pieces. Nevertheless, the difficulty of identifying PPs and the lack of systematic methods to automatically detect them has limited their use. However, based on a recent characterization of PPs in the superior temporal sulcus, we present here a method to automatically detect PPs in the superior temporal sulcus. Local morphology within the sulcus is characterized using cortical surface profiling, and the three-dimensional PP recognition problem is performed as a two-dimensional image classification problem with class-imbalance. This is solved by using an ensemble support vector machine model (EnsSVM) with a rebalancing strategy. Cross validation and quantitative experimental results on an external dataset show the effectiveness and robustness of our approach.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.008
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.261
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2022
Admission routes1
Has abstractyes

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