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Record W4311531332 · doi:10.3899/jrheum.220958

Evaluation of Tag Single-Nucleotide Polymorphisms for Identifying HLA-B27 Status in a Chinese Han Population

2022· letter· en· W4311531332 on OpenAlexvenueno aff
Nan Sheng, Wenwen Wang, Bo Zhang, Jingjing Zhao, Haojie Chen, Panfeng Feng, Yingying Gao, Xiaoxiang Chen

Bibliographic record

VenueThe Journal of Rheumatology · 2022
Typeletter
Languageen
FieldMedicine
TopicSpondyloarthritis Studies and Treatments
Canadian institutionsnot available
Fundersnot available
KeywordsSingle-nucleotide polymorphismHLA-B27SNPAnkylosing spondylitisAlleleMedicineHuman leukocyte antigenGeneticsPopulationSpondylitisImmunologyGenotypeBiologyAntigenGene

Abstract

fetched live from OpenAlex

Ankylosing spondylitis (AS) often presents with an insidious onset and is difficult to be distinguished from other arthritis.1 Due to the strong association between AS and HLA-B27,2 identifying HLA-B27 status is of great significance for assisting diagnosis in clinical practice. Compared with common methods for detecting HLA-B27 (eg, flow cytometry and HLA-B27 sequence detection methods), tag single-nucleotide polymorphisms (tag-SNPs) for HLA-B27 could readily infer HLA-B27 positivity according to the presence of 1 allele of tag-SNP (eg, the T allele for the rs116488202 SNP),3 suggesting a convenient strategy for identifying HLA-B27 status.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.004
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.051
GPT teacher head0.330
Teacher spread0.279 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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