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Record W4311572563 · doi:10.1038/s41597-022-01774-9

The global spectrum of plant form and function: enhanced species-level trait dataset

2022· article· en· W4311572563 on OpenAlex
Sandra Dı́az, Jens Kattge, Johannes H. C. Cornelissen, Ian J. Wright, Sandra Lavorel, Stéphane Dray, Björn Reu, Michael Kleyer, Christian Wirth, I. Colin Prentice, Éric Garnier, Gerhard Bönisch, Mark Westoby, Hendrik Poorter, Peter B. Reich, Angela T. Moles, John Dickie, Amy E. Zanne, Jérôme Chave, S. Joseph Wright‬, Serge Sheremetiev, Hervé Jactel, Christopher Baraloto, Bruno Enrico Leone Cerabolini, Simon Pierce, Bill Shipley, Fernando Casanoves, Julia Joswig, Angela Günther, Valeria Falczuk, Nadja Rüger, Miguel D. Mahecha, Lucas D. Gorné, Bernard Amiaud, Owen K. Atkin, Michael Bahn, Dennis Baldocchi, Michael Beckmann, Benjamin Blonder, William J. Bond, Ben Bond‐Lamberty, Kerry A. Brown, Sabina Burrascano, Chaeho Byun, Giandiego Campetella, Jeannine Cavender‐Bares, F. Stuart Chapin, Brendan Choat, David A. Coomes, William K. Cornwell, Joseph M. Craine, Dylan Craven, Matteo Dainese, Alessandro Araùjo, Franciska T. de Vries, Tomas F. Domingues, Brian J. Enquist, Jaime Fagúndez, Jingyun Fang, Fernando Fernández‐Méndez, María Teresa Fernández Piedade, HENRY FORD, Estelle Forey, Grégoire T. Freschet, Sophie Gachet, Rachael V. Gallagher, Walton Green, Greg R. Guerin, Álvaro G. Gutiérrez, Sandy P. Harrison, Wesley Hattingh, Tianhua He, Thomas Hickler, Steven I. Higgins, Pedro Higuchi, J. Ilic, Robert B. Jackson, Adel Jalili, Steven Jansen, Fumito Koike, Christian König, Nathan J. B. Kraft, K. Krämer, Holger Kreft, Ingolf Kühn, Hiroko Kurokawa, Eric G. Lamb, Daniel C. Laughlin, Michelle R. Leishman, Simon L. Lewis, Frédérique Louault, Ana C. M. Malhado, Peter Manning, Patrick Meir, Maurizio Mencuccini, Julie Messier, Regis B. Miller, Vanessa Minden, Jane Molofsky, Rebecca Montgomery, Gabriel Montserrat-Martı́, Marco Moretti, Sandra Müller, Ülo Niinemets, Romà Ogaya, Kinga Öllerer, V. G. Onipchenko, Yusuke Onoda, W.A. Ozinga, Juli G. Pausas, Begoña Peco, Josep Peñuelas, Valério D. Pillar, Clara Pladevall, Christine Römermann, Lawren Sack, Norma Salinas, Brody Sandel, Jordi Sardans, Brandon S. Schamp, Michael Scherer‐Lorenzen, Ernst‐Detlef Schulze, Fritz Hans Schweingruber, Satomi Shiodera, Ênio Sosinski, Nadejda A. Soudzilovskaia, Marko J. Spasojevic, Emily K. Swaine, Nathan G. Swenson, Susanne Tautenhahn, Ken Thompson, Alexia Totté, Rocío Urrutia‐Jalabert, Fernando Valladares, Peter M. van Bodegom, François Vasseur, Kris Verheyen, Denis Vile, Cyrille Violle, Betsy Von Holle, Patrick Weigelt, Evan Weiher, Michael C. Wiemann, Mathew Williams, Justin P. Wright, Gerhard Zotz

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueScientific Data · 2022
Typearticle
Languageen
FieldEnvironmental Science
TopicEcology and Vegetation Dynamics Studies
Canadian institutionsAlgoma UniversityUniversity of WaterlooUniversity of SaskatchewanUniversité de Sherbrooke
FundersDeutsches Zentrum für integrative Biodiversitätsforschung Halle-Jena-LeipzigRussian Science FoundationNatural Environment Research CouncilConsejo Nacional de Investigaciones Científicas y TécnicasNewton FundFondo para la Investigación Científica y TecnológicaInter-American Institute for Global Change ResearchUniversidad Nacional de Córdoba
KeywordsTraitBiologyCategorical variableVascular plantSpecific leaf areaPlant speciesTaxonomic rankBotanyEcologyStatisticsMathematicsSpecies richnessComputer science

Abstract

fetched live from OpenAlex

Here we provide the 'Global Spectrum of Plant Form and Function Dataset', containing species mean values for six vascular plant traits. Together, these traits -plant height, stem specific density, leaf area, leaf mass per area, leaf nitrogen content per dry mass, and diaspore (seed or spore) mass - define the primary axes of variation in plant form and function. The dataset is based on ca. 1 million trait records received via the TRY database (representing ca. 2,500 original publications) and additional unpublished data. It provides 92,159 species mean values for the six traits, covering 46,047 species. The data are complemented by higher-level taxonomic classification and six categorical traits (woodiness, growth form, succulence, adaptation to terrestrial or aquatic habitats, nutrition type and leaf type). Data quality management is based on a probabilistic approach combined with comprehensive validation against expert knowledge and external information. Intense data acquisition and thorough quality control produced the largest and, to our knowledge, most accurate compilation of empirically observed vascular plant species mean traits to date.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesScience and technology studies, Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.720
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0010.002
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.247
Teacher spread0.211 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it