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Record W4311572563 · doi:10.1038/s41597-022-01774-9

The global spectrum of plant form and function: enhanced species-level trait dataset

2022· article· en· W4311572563 on OpenAlexaff
Sandra Dı́az, Jens Kattge, Johannes H. C. Cornelissen, Ian J. Wright, Sandra Lavorel, Stéphane Dray, Björn Reu, Michael Kleyer, Christian Wirth, I. Colin Prentice, Éric Garnier, Gerhard Bönisch, Mark Westoby, Hendrik Poorter, Peter B. Reich, Angela T. Moles, John Dickie, Amy E. Zanne, Jérôme Chave, S. Joseph Wright‬, Serge Sheremetiev, Hervé Jactel, Christopher Baraloto, Bruno Enrico Leone Cerabolini, Simon Pierce, Bill Shipley, Fernando Casanoves, Julia Joswig, Angela Günther, Valeria Falczuk, Nadja Rüger, Miguel D. Mahecha, Lucas D. Gorné, Bernard Amiaud, Owen K. Atkin, Michael Bahn, Dennis Baldocchi, Michael Beckmann, Benjamin Blonder, William J. Bond, Ben Bond‐Lamberty, Kerry A. Brown, Sabina Burrascano, Chaeho Byun, Giandiego Campetella, Jeannine Cavender‐Bares, F. Stuart Chapin, Brendan Choat, David A. Coomes, William K. Cornwell, Joseph M. Craine, Dylan Craven, Matteo Dainese, Alessandro Araùjo, Franciska T. de Vries, Tomas F. Domingues, Brian J. Enquist, Jaime Fagúndez, Jingyun Fang, Fernando Fernández‐Méndez, María Teresa Fernández Piedade, HENRY FORD, Estelle Forey, Grégoire T. Freschet, Sophie Gachet, Rachael V. Gallagher, Walton Green, Greg R. Guerin, Álvaro G. Gutiérrez, Sandy P. Harrison, Wesley Hattingh, Tianhua He, Thomas Hickler, Steven I. Higgins, Pedro Higuchi, J. Ilic, Robert B. Jackson, Adel Jalili, Steven Jansen, Fumito Koike, Christian König, Nathan J. B. Kraft, K. Krämer, Holger Kreft, Ingolf Kühn, Hiroko Kurokawa, Eric G. Lamb, Daniel C. Laughlin, Michelle R. Leishman, Simon L. Lewis, Frédérique Louault, Ana C. M. Malhado, Peter Manning, Patrick Meir, Maurizio Mencuccini, Julie Messier, Regis B. Miller, Vanessa Minden, Jane Molofsky, Rebecca Montgomery, Gabriel Montserrat-Martı́, Marco Moretti, Sandra Müller, Ülo Niinemets, Romà Ogaya, Kinga Öllerer, V. G. Onipchenko, Yusuke Onoda, W.A. Ozinga, Juli G. Pausas, Begoña Peco, Josep Peñuelas, Valério D. Pillar, Clara Pladevall, Christine Römermann, Lawren Sack, Norma Salinas, Brody Sandel, Jordi Sardans, Brandon S. Schamp, Michael Scherer‐Lorenzen, Ernst‐Detlef Schulze, Fritz Hans Schweingruber, Satomi Shiodera, Ênio Sosinski, Nadejda A. Soudzilovskaia, Marko J. Spasojevic, Emily K. Swaine, Nathan G. Swenson, Susanne Tautenhahn, Ken Thompson, Alexia Totté, Rocío Urrutia‐Jalabert, Fernando Valladares, Peter M. van Bodegom, François Vasseur, Kris Verheyen, Denis Vile, Cyrille Violle, Betsy Von Holle, Patrick Weigelt, Evan Weiher, Michael C. Wiemann, Mathew Williams, Justin P. Wright, Gerhard Zotz

Bibliographic record

VenueScientific Data · 2022
Typearticle
Languageen
FieldEnvironmental Science
TopicEcology and Vegetation Dynamics Studies
Canadian institutionsAlgoma UniversityUniversity of WaterlooUniversity of SaskatchewanUniversité de Sherbrooke
FundersDeutsches Zentrum für integrative Biodiversitätsforschung Halle-Jena-LeipzigRussian Science FoundationNatural Environment Research CouncilConsejo Nacional de Investigaciones Científicas y TécnicasNewton FundFondo para la Investigación Científica y TecnológicaInter-American Institute for Global Change ResearchUniversidad Nacional de Córdoba
KeywordsTraitBiologyCategorical variableVascular plantSpecific leaf areaPlant speciesTaxonomic rankBotanyEcologyStatisticsMathematicsSpecies richnessComputer science

Abstract

fetched live from OpenAlex

Here we provide the 'Global Spectrum of Plant Form and Function Dataset', containing species mean values for six vascular plant traits. Together, these traits -plant height, stem specific density, leaf area, leaf mass per area, leaf nitrogen content per dry mass, and diaspore (seed or spore) mass - define the primary axes of variation in plant form and function. The dataset is based on ca. 1 million trait records received via the TRY database (representing ca. 2,500 original publications) and additional unpublished data. It provides 92,159 species mean values for the six traits, covering 46,047 species. The data are complemented by higher-level taxonomic classification and six categorical traits (woodiness, growth form, succulence, adaptation to terrestrial or aquatic habitats, nutrition type and leaf type). Data quality management is based on a probabilistic approach combined with comprehensive validation against expert knowledge and external information. Intense data acquisition and thorough quality control produced the largest and, to our knowledge, most accurate compilation of empirically observed vascular plant species mean traits to date.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.006
Threshold uncertainty score0.020

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0040.004
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0020.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0060.007

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.247
Teacher spread0.211 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations118
Published2022
Admission routes1
Has abstractyes

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