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Record W4312930243 · doi:10.56588/iabcd.v1i1.26

COMPUTATIONAL META-ANALYSIS OF CERVICAL CANCER USING AVAILABLE 16S RRNA NGS DATA

2022· article· en· W4312930243 on OpenAlex
Harsha Motwani, Naman Mangukia, Harshida Gadhavi, Saumya Patel, Hitesh Solanki

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueInternational Association of Biologicals and Computational Digest · 2022
Typearticle
Languageen
FieldMedicine
TopicCervical Cancer and HPV Research
Canadian institutionsImpact
Fundersnot available
KeywordsMetagenomicsBiologyMicrobiomeCervical cancer16S ribosomal RNAComputational biologyGeneCancerRibosomal RNAHuman Microbiome ProjectGenetics

Abstract

fetched live from OpenAlex

Cervical cancer is one of the most frequently occurring and deadliest gynaecological cancer which develops in cervical cells. Since it develops in tissues lining the internal organs it is a Carcinoma. Human papilloma virus infection is found to top the list of carcinogenic factors. Overexpression of certain proteins due to HPV integration in host body over a time can result in carcinoma. However vaginal microbiota plays a key role in development, persistence and progression of infections leading to diseases such as cervical cancer. Some recent studies have revealed potential roles of microbiome in cervicovaginal diseases. Thus a comparative metagenomic study among such samples can uncover microbial diversities present in these samples. Due to presence of highly conserved regions as well as hyper variable regions 16s rRNA gene sequence is selected for identification and classification of bacterial diversity. For the purpose of metagenomic analysis 16s rRNA gene sequences were analysed using QIIME pipeline.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.160
Threshold uncertainty score0.979

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0220.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.217
GPT teacher head0.414
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it