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The application of ctDNA technology for early Cancer diagnostics in Samoa

2018· article· en· W4313359325 on OpenAlexaff
Dianne Sika‐Paotonu, Satupaitea Viali, Leausa Toleafoa Take K. Naseri, Fui Le’apai Tu’ua Ilaoa Asofou So’o, Toleafoa Viali Lameko, Monalisa Punivalu, Shelley Burich, Fuatai Maiava, Salausa John Ah-Ching, Parry Guilford

Bibliographic record

VenueThe Journal of Immunology · 2018
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer Genomics and Diagnostics
Canadian institutionsLibrary of Parliament
Fundersnot available
KeywordsCancerHealth careCancer detectionCirculating tumor DNAMedicineLiquid biopsyGovernment (linguistics)OncologyAmerican samoaFamily medicineIntensive care medicineInternal medicinePolitical scienceGeography

Abstract

fetched live from OpenAlex

Abstract Fragmented pieces of tumor DNA can be found in the human blood circulation. These tumor DNA fragments can be isolated and quantified to produce detailed information related to cancer progression and treatment responses in patients. This monitoring and analysis comprises a novel cancer detection method known as circulating tumor DNA (ctDNA). Given that gaining access to and obtaining biopsy samples from solid cancers in people is not always possible or as straightforward as needed, the utilization of a simple blood sample to allow detection and monitoring of cancer growth and behavior is highly desirable. This simple detection and monitoring technology is likely enhance the precision of cancer care for patients, and support early cancer detection. The purpose of this work was to explore in detail the potential for ctDNA to be utilized as an early cancer detection tool within the healthcare setting within the Pacific in Samoa. Consultation was sought with senior Government officials, Medical, Nursing, Health and Community research staff concerning the development and implementation of ctDNA as a diagnostic tool within the clinical health care setting throughout Samoa. The application of the ctDNA technology as an early cancer detection tool within the clinical healthcare setting was explored in depth and received with approval, given issues that currently exist concerning resource constraints and late cancer presentations. It is anticipated that the utility of ctDNA as an early cancer detection tool will support improved cancer management within the health care setting in Samoa.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.024
Threshold uncertainty score0.047

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.263
Teacher spread0.257 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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