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Easy, column-free procedure for the enrichment of human Th1 cells from peripheral blood (P3239)

2013· article· en· W4313379025 on OpenAlexaff
Maureen Fairhurst, Jessie Z. Yu, Susan de Jong, Terry E. Thomas

Bibliographic record

VenueThe Journal of Immunology · 2013
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmune Cell Function and Interaction
Canadian institutionsStemcell Technologies
Fundersnot available
KeywordsCXCR3Cytotoxic T cellChemokineInterleukin 21T cellCD40IntracellularAntigen-presenting cellCell biologyMolecular biologyBiologyNatural killer T cellImmunomagnetic separationChemistryChemokine receptorImmunologyImmune systemBiochemistryIn vitro

Abstract

fetched live from OpenAlex

Abstract Upon activation naïve T helper (Th) precursor cells are polarized toward various cell subtypes and can be distinguished from each other based on effector function and chemokine expression. Th1 cells regulate cellular immunity via IL-2 plus IFN-γ, activating macrophages, cytotoxic T, NK and B cells in an effort to eliminate intracellular pathogens. Th1 cells preferentially express the chemokine receptors CXCR3 and CCR5 and can be further characterized by intracellular staining for IFN-γ. We have developed a 2-step EasySepTM immunomagnetic column-free method for the enrichment of CD4+CXCR3+ T cells from fresh peripheral blood nucleated cells. First, non-CD4 T cells are targeted for depletion using dextran-coated magnetic particles and a cocktail of antibody complexes. Labeled cells are separated using an EasySepTM magnet, and pre-enriched CD4 T cells are poured off. CXCR3+ cells are then positively selected from the pre-enriched fraction. The procedure can be automated using RoboSepTM. With an initial frequency of 10 ± 3% CD4+CXCR3+ cells, purities of 90 ± 4% (n=12) can be obtained. When stimulated, a high proportion of these cells produce IFN-γ (68 ± 12%) compared with total CD4 T cells and pre-enriched CD4 T cells. Less than 1% of isolated cells produce cytokines associated with other Th cell subtypes (IL-4, IL-17). Enrichment of unstimulated human Th1 cells enables the investigation of chronic inflammation responses and mechanisms of regulation in human models of disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.021
Threshold uncertainty score0.070

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0210.031

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.223
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2013
Admission routes1
Has abstractyes

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