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Recruited macrophages fail to restrict intracellular growth of <i>Mycobacterium tuberculosis</i>

2018· article· en· W4313383893 on OpenAlexaff
Jessica Jang, J. Ernst

Bibliographic record

VenueThe Journal of Immunology · 2018
Typearticle
Languageen
FieldMedicine
TopicTuberculosis Research and Epidemiology
Canadian institutionsYork University
Fundersnot available
KeywordsBiologyMyeloidMicrobiologyChemokineMyelopoiesisMycobacterium tuberculosisFlow cytometryIntracellular parasiteImmunologyIntracellularCell biologyInflammationTuberculosisHaematopoiesisMedicineStem cell

Abstract

fetched live from OpenAlex

Abstract Mycobacterium tuberculosis (Mtb), a bacterium that predominantly afflicts the lungs, infects over 10 million people per year and causes 1.7 million deaths per year. Immediately following infection, subsets of pulmonary myeloid cells will become infected with Mtb, starting with alveolar macrophages, and eventually spreading to neutrophils, recruited macrophages, monocytes and dendritic cells. These cells differ in their ability to restrict intracellular growth of Mtb. Using reporter Mtb that constitutively express mCherry and express GFP under the tetracycline promoter, we can differentiate between live Mtb (mCherry+ GFP+) and dead Mtb (mCherry+) by flow cytometry. We show that a larger percentage of CD11b+ recruited macrophages and Ly6C+ monocytes in the lungs contain live Mtb and fewer dead Mtb compared to other myeloid populations. This has been validated by sorting infected myeloid cells by flow cytometry and plating colony forming units (CFU). Recruited macrophages averaged 5,000–8,000 live bacilli per 1,000 sorted cells, while alveolar macrophages, neutrophils and dendritic cells harbored 1,000–2,000 live bacteria/1,000 sorted cells. Furthermore, genome-wide transcriptional profiling of these sorted myeloid populations reveal substantial differences in anti-bacterial mechanisms, metabolism and chemokine production between recruited macrophages and other myeloid populations. These include changes in production of interferons, lysosomal genes and tumor necrosis factor superfamily. Altogether, these data reveal that recruited macrophages are unable to restrict the intracellular growth and create a favorable environment for Mtb growth through their deficiency in anti-bacterial cytokines.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.302
Teacher spread0.279 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2018
Admission routes1
Has abstractyes

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