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The Effect of Various Stimulants on Cytokine Secretion Profiles in Freshly Isolated Peripheral Blood Mononuclear Cells (PBMC)

2022· article· en· W4313422193 on OpenAlexaff
Rebecca Lefavor, Emer Clarke

Bibliographic record

VenueThe Journal of Immunology · 2022
Typearticle
Languageen
FieldMedicine
TopicHematopoietic Stem Cell Transplantation
Canadian institutionsReach Technologies (Canada)
Fundersnot available
KeywordsCytokinePeripheral blood mononuclear cellTumor necrosis factor alphaImmunologyAntibodyBiologyViability assayInterferonChemistryMolecular biologyIn vitroBiochemistry

Abstract

fetched live from OpenAlex

Abstract Cytokines play critical roles in in cancer, in regulating autoimmune diseases and in chemically induced tissue damage repair. In response to antibody treatment or as a result of corona virus disease (COVID), a cytokine storm may occur where high levels of inflammatory cytokines are produced leading to organ damage. To understand how to regulate cytokine levels, primary cell in vitro assays may assess the effects of small molecule compounds or antibodies. We evaluated OKT3, Polyinosinic-polycytidylic acid (Poly I:C), Resiquimod, CpG oligodeoxynucleotides (CpG ODN), DynaBeads with aCD3/aCD28, Phytohemagglutinin (PHA)-M and lipoplolysaccharide (LPS) on cytokine secretion from 6 normal donors. PBMCs isolated from fresh blood using a density gradient medium were plated at 1 × 105 cells per well in the presence and absence of the test compounds for 48 hours. Supernatants were assessed for interleukin 2 (IL-2), tumor necrosis factor-α (TNFα) and interferon-γ (IFNγ). The remaining cells were assessed for viability to evaluate cytotoxicity. Flow cytometric profiles of T cell subsets were determined. The data generated from the 6 normal donors varied greatly, though the effects of the stimulants followed the same trends. The Dynabeads (CD3/28) generated the highest values of IL-2, IFNγ and TNFα in all donors. OKT3 and PHA-M, Resiquimod and LPS generated lesser amounts of the cytokines whereas Poly I:C and CpG ODN did not induce these cytokines over background levels. Only PHA-M caused a decrease in cell viability. Additionally, the release of cytokines was not associated with activation of T cells. Cytokine release assays provide a robust readout with certain stimuli and may facilitate evaluation of novel test compounds for functional activity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.235
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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