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Record W4317569081 · doi:10.1016/j.jmb.2023.167971

Phase Separation in Biology and Disease; Current Perspectives and Open Questions

2023· article· en· W4317569081 on OpenAlexafffund
Steven Boeynaems, Shasha Chong, Jörg Gsponer, Liam J. Holt, Dragomir Milovanović, Diana M. Mitrea, Oliver Mueller‐Cajar, Bede Portz, John F. Reilly, Christopher D. Reinkemeier, Benjamin R. Sabari, Serena Sanulli, James Shorter, Emily M. Sontag, Lucia C. Strader, Jeanne C. Stachowiak, Stephanie C. Weber, Michael R. White, Huaiying Zhang, Markus Zweckstetter, Shana Elbaum‐Garfinkle, Richard W. Kriwacki

Bibliographic record

VenueJournal of Molecular Biology · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA Research and Splicing
Canadian institutionsCanada's Michael Smith Genome Sciences CentreMcGill UniversityUniversity of British Columbia
FundersDivision of Biological InfrastructureNational Institute of Neurological Disorders and StrokeNational Institute of General Medical SciencesNational Cancer InstituteMultidisciplinary University Research InitiativeNational Institutes of HealthCanada Research ChairsSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungNational Institute on AgingTarget ALSAmerican Lebanese Syrian Associated CharitiesCity University of New YorkSearle Scholars ProgramShurl and Kay Curci FoundationSanofiDeutsches Zentrum für Neurodegenerative ErkrankungenDeutsche ForschungsgemeinschaftNatural Sciences and Engineering Research Council of CanadaAlfred P. Sloan FoundationCancer Prevention and Research Institute of TexasALS AssociationCanadian Institutes of Health ResearchNational Science Foundation
KeywordsComputational biologyBiologyNanotechnologyHuman diseaseSystems biologyScrutinySynthetic biologyGeneticsPolitical scienceGeneMaterials science

Abstract

fetched live from OpenAlex

In the past almost 15 years, we witnessed the birth of a new scientific field focused on the existence, formation, biological functions, and disease associations of membraneless bodies in cells, now referred to as biomolecular condensates. Pioneering studies from several laboratories [reviewed in1, 2, 3] supported a model wherein biomolecular condensates associated with diverse biological processes form through the process of phase separation. These and other findings that followed have revolutionized our understanding of how biomolecules are organized in space and time within cells to perform myriad biological functions, including cell fate determination, signal transduction, endocytosis, regulation of gene expression and protein translation, and regulation of RNA metabolism. Further, condensates formed through aberrant phase transitions have been associated with numerous human diseases, prominently including neurodegeneration and cancer. While in some cases, rigorous evidence supports links between formation of biomolecular condensates through phase separation and biological functions, in many others such links are less robustly supported, which has led to rightful scrutiny of the generality of the roles of phase separation in biology and disease.4, 5, 6, 7 During a week-long workshop in March 2022 at the Telluride Science Research Center (TSRC) in Telluride, Colorado, ∼25 scientists addressed key questions surrounding the biomolecular condensates field. Herein, we present insights gained through these discussions, addressing topics including, roles of condensates in diverse biological processes and systems, and normal and disease cell states, their applications to synthetic biology, and the potential for therapeutically targeting biomolecular condensates.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.738
Threshold uncertainty score0.284

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.447
Teacher spread0.425 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations86
Published2023
Admission routes2
Has abstractyes

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