MétaCan
Menu
Back to cohort
Record W4318570212 · doi:10.1016/j.cmpbup.2023.100096

Semi-supervised active transfer learning for fetal ECG arrhythmia detection

2023· article· en· W4318570212 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueComputer Methods and Programs in Biomedicine Update · 2023
Typearticle
Languageen
FieldMedicine
TopicECG Monitoring and Analysis
Canadian institutionsUniversity of Saskatchewan
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsAutoencoderTransfer of learningArtificial intelligenceComputer scienceAnomaly detectionPattern recognition (psychology)Deep learningCalibrationMachine learningStatisticsMathematics

Abstract

fetched live from OpenAlex

Deep learning has demonstrated excellent results for ECG anomaly detection, wherein most approaches used supervised learning. The requirement of thousands of manually annotated samples is a concern for state-of-the-art anomaly detection systems, especially for fetal ECG (FECG), and currently, there is not a publicly available FECG dataset annotated for each FECG beat. In this paper, we offer a modified active learning technique based on transfer learning, calibration probability, and autoencoder-based sampling to reduce number of samples requires to annotate. In this regard, we used 25,000 s of recording from 47 patients from the MIT-BIH Arrhythmia Database to train a deep learning model to detect anomalies in non-fetus subjects. Then we used the unlabeled Non-Invasive Fetal ECG Arrhythmia Database (NIFEA DB) of 26 subjects to fine-tune the trained model to fine-tune the trained model based on active learning to detect anomalies in binary form for fetal. A variational autoencoder is trained on all data (adult and fetal ECG), and clustering is applied to latent features extracted from data after dimension reduction. Then, the sampling process of active learning selected samples from different clusters with low confidence to cover all data distribution. Moreover, a probability calibration based on mc-dropout and isotonic regression is used to calibrate confidences, helping to select reliable low-confidence samples. Various ablation studies were performed to show the influence of autoencoder-based sampling, calibration, and transfer learning, which showed that the proposed method could achieve 92% accuracy using 399 training samples. In contrast, other methods required more training samples to reach the same level of accuracy without calibration or an autoencoder and clustering approach or training without active learning. The study also found that transfer learning significantly impacted faster convergence and that the proposed active learning approach was more effective than traditional methods.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.985
Threshold uncertainty score0.663

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.051
GPT teacher head0.368
Teacher spread0.316 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it