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Record W4361287013 · doi:10.15252/embr.202256156

Resting natural killer cell homeostasis relies on tryptophan/NAD+ metabolism and HIF‐1α

2023· article· en· W4361287013 on OpenAlexfundno aff
Abigaelle Pelletier, Eric Nelius, Zheng Fan, Ekaterina Khatchatourova, Abdiel Alvarado-Diaz, Jingyi He, Ewelina Krzywińska, Michal Sobecki, Shunmugam Nagarajan, Yann M. Kerdiles, Joachim Fandrey, Dagmar Gotthardt, Veronika Sexl, Katrien De Bock, Christian Stockmann

Bibliographic record

VenueEMBO Reports · 2023
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmune Cell Function and Interaction
Canadian institutionsnot available
FundersUniversität ZürichSwiss Cancer Research FoundationSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungSaskatoon Community Foundation
KeywordsNAD+ kinaseGlycolysisCell biologyNicotinamide adenine dinucleotideHypoxia-inducible factorsBiologyOxidative phosphorylationMetabolismTranscription factorHomeostasisBiochemistryCellChemistryEnzyme

Abstract

fetched live from OpenAlex

Abstract Natural killer (NK) cells are forced to cope with different oxygen environments even under resting conditions. The adaptation to low oxygen is regulated by oxygen‐sensitive transcription factors, the hypoxia‐inducible factors (HIFs). The function of HIFs for NK cell activation and metabolic rewiring remains controversial. Activated NK cells are predominantly glycolytic, but the metabolic programs that ensure the maintenance of resting NK cells are enigmatic. By combining in situ metabolomic and transcriptomic analyses in resting murine NK cells, our study defines HIF‐1α as a regulator of tryptophan metabolism and cellular nicotinamide adenine dinucleotide (NAD + ) levels. The HIF‐1α/NAD + axis prevents ROS production during oxidative phosphorylation (OxPhos) and thereby blocks DNA damage and NK cell apoptosis under steady‐state conditions. In contrast, in activated NK cells under hypoxia, HIF‐1α is required for glycolysis, and forced HIF‐1α expression boosts glycolysis and NK cell performance in vitro and in vivo . Our data highlight two distinct pathways by which HIF‐1α interferes with NK cell metabolism. While HIF‐1α‐driven glycolysis is essential for NK cell activation, resting NK cell homeostasis relies on HIF‐1α‐dependent tryptophan/NAD + metabolism.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.297
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.236
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations23
Published2023
Admission routes1
Has abstractyes

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