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Record W4361857113 · doi:10.47371/mycosci.myc51144

Transfer of two <i>Helicoma</i> species to <i>Troposporella</i> based on molecular and morphological data

2010· article· en· W4361857113 on OpenAlexafffund
Clement K. M. Tsui, Mary L. Berbee

Bibliographic record

VenueMycoscience · 2010
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of CanadaCroucher Foundation
KeywordsBiologyPolyphylyDothideomycetesBotanyCladeInternal transcribed spacerTaxonomy (biology)Type speciesPhylogeneticsMolecular phylogeneticsZoologyRibosomal RNAGeneticsGene

Abstract

fetched live from OpenAlex

Previous molecular data demonstrated that, although Helicoma is polyphyletic, most species in the genus, including the type Helicoma muelleri, are in the Tubeufiaceae. Here, we use analysis of the small subunit and internal transcribed spacers (ITS) rDNA regions to show that two species, H. monilipes and H. olivaceum, are phylogenetically distant from the type, branching outside of the Tubeufiaceae near Troposporella fumosa in a basal clade of the Dothideomycetes. The phylogeny does not support the recent transfer of T. fumosa to Helicoma. Instead, based on the molecular evidence as well as the examination of cultures and type specimens, Troposporella is reinstated at the generic level, and Helicoma monilipes and Helicoma olivaceum are transferred to Troposporella. All three Troposporella species share the production of helicoid conidia borne on sporodochial conidiomata from blastic conidiogenous cells. A key to accepted species is provided.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.222
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.245
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2010
Admission routes2
Has abstractyes

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