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Record W4362576400 · doi:10.22215/etd/2023-15454

Differential Introgression Between the Northern and Southern Extents of the Lodgepole x Jack Pine Hybrid Zone Suggests Environmentally-driven Selection and Local Adaptation.

2023· dissertation· en· W4362576400 on OpenAlexaffabout
Danya Yaremchuk

Bibliographic record

Venuenot available
Typedissertation
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsCarleton University
Fundersnot available
KeywordsIntrogressionCline (biology)Hybrid zoneBackcrossingHybridBiologyLocal adaptationAdaptation (eye)Evolutionary biologyGenetic variationGeneticsBotanyGeneGene flowPopulation

Abstract

fetched live from OpenAlex

Hybrid zones provide a unique opportunity to study evolutionary consequences and selective pressures maintaining species boundaries in the hybridizing species.Lodgepole and jack pine are two native-Canadian species that form a mosaic hybrid zone in western Canada.Introgression occurs between lodgepole and jack pine through this hybrid zone by repeated backcrossing with advanced generation hybrid progeny.Using environmentally associated SNPs identified by redundancy analyses, we examined patterns of introgression between the northern and southern extents of this hybrid zone to identify differential introgression.Through genomic cline analyses, we found significant introgression of these SNPs across the hybrid zone.Twenty-eight SNPs had significantly different patterns of introgression between the northern and southern extents.Fine-scale patterns revealed several SNPs that were introgressing more frequently than expected, suggesting adaptive introgression.We found that patterns of adaptive introgression are occurring more frequently in the northern extent compared to the southern extent, suggesting different environmental pressures.The genetic variation observed between the two hybrid extents has implications in climate change considerations as it may result the two regions responding differently to changing environmental conditions.Using gene annotations and major allele frequency maps, we identified evidence of differing environmental pressures resulting in putative local adaptation within this hybrid zone.Sharing adaptations through this hybrid zone could be an important resource of adaptive potential in these pines species as climate change continues to disrupt forest ecosystems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.021
Threshold uncertainty score0.042

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.215
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes2
Has abstractyes

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