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Meeting report: The first soil viral workshop 2022

2023· article· en· W4366776672 on OpenAlexaff
Živilė Buivydaitė, Laxman Aryal, Felipe Borim Corrêa, Tingting Chen, Valérie Langlois, Christine Lorenzen Elberg, Tarquin Netherway, Ruiqi Wang, Tianci Zhao, Basistha Acharya, Joanne Emerson, Luke S. Hillary, Ram B. Khadka, Kyle Mason‐Jones, Rumakanta Sapkota, Suvi Sutela, Gareth Trubl, Richard White, Anne Winding, Cátia Carreira

Bibliographic record

VenueVirus Research · 2023
Typearticle
Languageen
FieldEnvironmental Science
TopicBacteriophages and microbial interactions
Canadian institutionsUniversité Laval
FundersBiological and Environmental ResearchUniversity of North Carolina at CharlotteOffice of ScienceNovo Nordisk FondenChina Scholarship CouncilNederlandse Organisatie voor Wetenschappelijk OnderzoekNational Institute of Food and AgricultureRijksuniversiteit GroningenDeutsche ForschungsgemeinschaftFriedrich-Schiller-Universität JenaVillum FondenVetenskapsrådetNepal Agricultural Research CouncilLawrence Livermore National LaboratoryNovo NordiskU.S. Department of EnergyAarhus UniversitetU.S. Department of Agriculture
KeywordsBiologyLibrary scienceEngineering ethicsEcologyEngineeringComputer science

Abstract

fetched live from OpenAlex

• The first Soil Viral Workshop took place in Denmark in 2022. • The workshop facilitated collaboration and suggested guidelines for future research. • Soil virus genomics, virus-host interactions and viruses in food web were discussed. Soil viral ecology is a growing research field; however, the state of knowledge still lags behind that of aquatic systems. Therefore, to facilitate progress, the first Soil Viral Workshop was held to encourage international scientific discussion and collaboration, suggest guidelines for future research, and establish soil viral research as a concrete research area. The workshop took place at Søminestationen, Denmark, between 15 and 17th of June 2022. The meeting was primarily held in person, but the sessions were also streamed online. The workshop was attended by 23 researchers from ten different countries and from a wide range of subfields and career stages. Eleven talks were presented, followed by discussions revolving around three major topics: viral genomics, virus-host interactions, and viruses in the soil food web. The main take-home messages and suggestions from the discussions are summarized in this report.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.541
Threshold uncertainty score0.996

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0050.012

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.067
GPT teacher head0.370
Teacher spread0.303 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes1
Has abstractyes

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