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Record W4367852601 · doi:10.1080/23746149.2023.2197623

Atomic force microscopy and other scanning probe microscopy methods to study nanoscale domains in model lipid membranes

2023· article· en· W4367852601 on OpenAlexaff
Morgan Robinson, Carina T. Filice, Danielle M. McRae, Zoya Leonenko

Bibliographic record

VenueAdvances in Physics X · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLipid Membrane Structure and Behavior
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsLipid raftMembraneBiological membraneMicroscopyAtomic force microscopyBiophysicsCell membraneLipid bilayerTransmembrane proteinChemistryNanotechnologyKelvin probe force microscopeMembrane biophysicsForce spectroscopyCell biologyMaterials scienceBiologyBiochemistryPhysicsReceptor

Abstract

fetched live from OpenAlex

ABSTRACTThe cell membrane is a fundamental biological structure, which is only 6–10 nm thick. It is composed of hundreds of lipid types, which form small and dynamic lipid domains or rafts. These rafts are thought to be a major aspect of cell organization, to provide support for various transmembrane proteins and are central to the communication of cells with their environs. Understanding the functions of lipid rafts presents an exciting opportunity to understand the molecular mechanisms of biologically important processes, as well as to uncover fundamental molecular mechanisms of membrane-associated diseases. Due to the high complexity of cell membranes, model membranes composed of synthetic lipids have been developed and are widely used to mimic biomembranes in an effort to study the structure and dynamics of lipid domains and their role in cell function. Atomic force microscopy (AFM), Kelvin probe force microscopy (KPFM) and atomic force spectroscopy (AFS) significantly advanced the study of nanodomains in model lipid membranes and monolayers. We review applications of these methods to the study of model membranes, which are widely used to mimic eukaryotic and bacterial cells, as well as neuronal cellular membranes in Alzheimer’s disease (AD).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.360
Teacher spread0.346 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2023
Admission routes1
Has abstractyes

Explore more

Same venueAdvances in Physics XSame topicLipid Membrane Structure and BehaviorFrench-language works237,207