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Record W4378714966 · doi:10.1111/nph.18994

New insights into natural rubber biosynthesis from rubber‐deficient lettuce mutants expressing goldenrod or guayule <i>cis</i>‐prenyltransferase

2023· article· en· W4378714966 on OpenAlexafffund
Moonhyuk Kwon, Connor L. Hodgins, Eman M. Salama, Kayla R. Dias, Aalap Parikh, Ashlyn V. Mackey, Karizza F. Catenza, John C. Vederas, Dae‐Kyun Ro

Bibliographic record

VenueNew Phytologist · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant biochemistry and biosynthesis
Canadian institutionsUniversity of AlbertaUniversity of Calgary
FundersNatural Sciences and Engineering Research Council of CanadaChinese Academy of Tropical Agricultural SciencesNational Research Foundation of KoreaMinistry of Trade, Industry and EnergyUniversity of AlbertaNational Research FoundationRural Development Administration
KeywordsMutantBiologyPrenyltransferaseMutagenesisBotanyBiochemistryBiosynthesisGene

Abstract

fetched live from OpenAlex

Summary Lettuce produces natural rubber (NR) with an average M w of &gt; 1 million Da in laticifers, similar to NR from rubber trees. As lettuce is an annual, self‐pollinating, and easily transformable plant, it is an excellent model for molecular genetic studies of NR biosynthesis. CRISPR/Cas9 mutagenesis was optimized using lettuce hairy roots, and NR‐deficient lettuce was generated via bi‐allelic mutations in cis ‐prenyltransferase ( CPT ). This is the first null mutant of NR deficiency in plants. In the CPT mutant, orthologous CPT counterparts from guayule ( Parthenium argentatum ) and goldenrod ( Solidago canadensis ) were expressed under a laticifer‐specific promoter to examine how the average M w of NR is affected. No developmental defects were observed in the NR‐deficient mutants. The lettuce mutants expressing guayule and goldenrod CPT produced 1.8 and 14.5 times longer NR, respectively, than the plants of their origin. This suggests that, although goldenrod cannot synthesize a sufficiently lengthy NR, goldenrod CPT has the catalytic competence to produce high‐quality NR in the cellular context of lettuce laticifers. Thus, CPT alone does not determine the length of NR. Other factors, such as substrate concentration, additional proteins, and/or the nature of protein complexes including CPT‐binding proteins, influence CPT activity in determining NR length.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.027
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.249
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2023
Admission routes2
Has abstractyes

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