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Record W4379539304 · doi:10.1038/s41592-024-02237-2

brainlife.io: a decentralized and open-source cloud platform to support neuroscience research

2024· article· en· W4379539304 on OpenAlexaff
Soichi Hayashi, Bradley Caron, Anibal Sólon Heinsfeld, Sophia Vinci‐Booher, Brent McPherson, Daniel Bullock, Giulia Bertò, Guiomar Niso, Sandra Hanekamp, Daniel Levitas, Kimberly L. Ray, A. Mackenzie, Paolo Avesani, Lindsey Kitchell, Josiah K. Leong, Filipi N. Silva, Serge Koudoro, Hanna E. Willis, Jasleen K. Jolly, Derek Pisner, Taylor R. Zuidema, Jan W. Kurzawski, Kyriaki Mikellidou, Aurore Bussalb, Maximilien Chaumon, Nathalie George, Chris Rorden, Conner Victory, Dheeraj Bhatia, Dogu Baran Aydogan, Fang‐Cheng Yeh, Franco Delogu, Javier Guaje, Jelle Veraart, Jeremy Fischer, Joshua Faskowitz, Ricardo Fábrega, David Hunt, S. P. Mc Kee, Shawn T. Brown, Stephanie Heyman, Vittorio Iacovella, Amanda F. Mejia, Daniele Marinazzo, R. Cameron Craddock, Emanuale Olivetti, Jamie L. Hanson, Eleftherios Garyfallidis, Dan Stanzione, James P. Carson, Robert Henschel, David Y. Hancock, Craig A. Stewart, David M. Schnyer, Damian Eke, Russell A. Poldrack, Steffen Bollmann, Ashley Stewart, Holly Bridge, Ilaria Sani, Winrich A. Freiwald, Aina Puce, Nicholas Port, Franco Pestilli

Bibliographic record

VenueNature Methods · 2024
Typearticle
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsMcGill University
FundersNational Institute of Biomedical Imaging and BioengineeringNational Institute on Drug AbuseAgence Nationale de la RechercheWellcome TrustMicrosoft ResearchNational Institute of Neurological Disorders and StrokeNational Institute of Mental HealthNational Science FoundationWellcomeKavli FoundationNational Institutes of HealthU.S. Department of Health and Human Services
KeywordsStandardizationTransparency (behavior)Computer scienceCloud computingData scienceOpen sciencePipeline (software)Open dataData managementBig dataModalitiesBrain researchBest practiceSoftwareWorld Wide WebNeuroscienceDatabaseData miningComputer securityPsychologyPolitical science

Abstract

fetched live from OpenAlex

Neuroscience is advancing standardization and tool development to support rigor and transparency. Consequently, data pipeline complexity has increased, hindering FAIR (findable, accessible, interoperable and reusable) access. brainlife.io was developed to democratize neuroimaging research. The platform provides data standardization, management, visualization and processing and automatically tracks the provenance history of thousands of data objects. Here, brainlife.io is described and evaluated for validity, reliability, reproducibility, replicability and scientific utility using four data modalities and 3,200 participants.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.007
metaresearch head score (Gemma)0.072
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.736
Threshold uncertainty score0.936

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0070.072
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.003
Science and technology studies0.0010.000
Scholarly communication0.0010.001
Open science0.0010.002
Research integrity0.0000.002
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.217
GPT teacher head0.522
Teacher spread0.305 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations70
Published2024
Admission routes1
Has abstractyes

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