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Record W4380627353 · doi:10.1117/1.jmi.10.3.036003

Random matrix theory tools for the predictive analysis of functional magnetic resonance imaging examinations

2023· article· en· W4380627353 on OpenAlex
Derek Berger, Gurpreet S. Matharoo, Jacob Levman

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueJournal of Medical Imaging · 2023
Typearticle
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsNova Scotia Health AuthoritySt. Francis Xavier University
FundersNatural Sciences and Engineering Research Council of CanadaUniversity of WaterlooMassachusetts General HospitalUniversity of TorontoUniversity of OxfordSt. Francis Xavier University
KeywordsMedicineMagnetic resonance imagingRadiologyNuclear magnetic resonanceMedical physicsNuclear medicine

Abstract

fetched live from OpenAlex

Purpose: Random matrix theory (RMT) is an increasingly useful tool for understanding large, complex systems. Prior studies have examined functional magnetic resonance imaging (fMRI) scans using tools from RMT, with some success. However, RMT computations are highly sensitive to a number of analytic choices, and the robustness of findings involving RMT remains in question. We systematically investigate the usefulness of RMT on a wide variety of fMRI datasets using a rigorous predictive framework. Approach: We develop open-source software to efficiently compute RMT features from fMRI images and examine the cross-validated predictive potential of eigenvalue and RMT-based features ("eigenfeatures") with classic machine-learning classifiers. We systematically vary pre-processing extent, normalization procedures, RMT unfolding procedures, and feature selection and compare the impact of these analytic choices on the distributions of cross-validated prediction performance for each combination of dataset binary classification task, classifier, and feature. To deal with class imbalance, we use the area under the receiver operating characteristic curve (AUROC) as the main performance metric. Results: , median AUROC range across classification tasks 0.42 to 0.62). Additionally, eigenfeature AUROC distributions were overall more right-tailed than baseline features, suggesting greater predictive potential. However, performance distributions were wide and often significantly affected by analytic choices. Conclusions: Eigenfeatures clearly have potential for understanding fMRI functional connectivity in a wide variety of scenarios. The utility of these features is strongly dependent on analytic decisions, suggesting caution when interpreting past and future studies applying RMT to fMRI. However, our study demonstrates that the inclusion of RMT statistics in fMRI investigations could improve prediction performances across a wide variety of phenomena.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.083
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.946
Threshold uncertainty score0.925

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0050.083
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.002
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.318
Teacher spread0.281 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it