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Record W4381158347 · doi:10.1093/nar/gkae388

Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing

2024· article· en· W4381158347 on OpenAlexafffund
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D. Bader, Sylvie Baier, David B. Blumenthal, Jing Chen, Maria L. Elkjaer, Carlos García-Hernández, Mohamed Helmy, Markus Hoffmann, Igor Jurišica, Max Kotlyar, Olga Lazareva, Hagai Levi, Markus List, Sebastian Lobentanzer, Joseph Loscalzo, Noël Malod‐Dognin, Quirin Manz, Julian Matschinske, Miles W. Mee, Mhaned Oubounyt, Chiara Pastrello, Alexander R. Pico, Rudolf Pillich, Julian Poschenrieder, Dexter Pratt, Nataša Pržulj, Sepideh Sadegh, Julio Sáez-Rodríguez, Suryadipto Sarkar, Gideon M. Shaked, Ron Shamir, Nico Trummer, Ugur Turhan, Rui‐Sheng Wang, Olga Zolotareva, Jan Baumbach

Bibliographic record

VenueNucleic Acids Research · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBioinformatics and Genomic Networks
Canadian institutionsLakehead UniversityUniversity of SaskatchewanPrincess Margaret Cancer CentreLunenfeld-Tanenbaum Research InstituteArthritis SocietyMount Sinai HospitalUniversity of TorontoUniversity Health NetworkDiscovery Centre
FundersH2020 European Research CouncilAgencia Estatal de InvestigaciónNational Institute of Diabetes and Digestive and Kidney DiseasesDeutsche ForschungsgemeinschaftStaatssekretariat für Bildung, Forschung und InnovationHORIZON EUROPE Framework ProgrammeLundbeckfondenBundesministerium für Bildung und ForschungNatural Sciences and Engineering Research Council of CanadaEuropean CommissionHorizon 2020 Framework ProgrammeCanada Foundation for Innovation
KeywordsBiologyDrug repositioningRepurposingPlug and playDrugDrug discoveryComputational biologyPharmacologyBioinformaticsComputer scienceEcology

Abstract

fetched live from OpenAlex

In recent decades, the development of new drugs has become increasingly expensive and inefficient, and the molecular mechanisms of most pharmaceuticals remain poorly understood. In response, computational systems and network medicine tools have emerged to identify potential drug repurposing candidates. However, these tools often require complex installation and lack intuitive visual network mining capabilities. To tackle these challenges, we introduce Drugst.One, a platform that assists specialized computational medicine tools in becoming user-friendly, web-based utilities for drug repurposing. With just three lines of code, Drugst.One turns any systems biology software into an interactive web tool for modeling and analyzing complex protein-drug-disease networks. Demonstrating its broad adaptability, Drugst.One has been successfully integrated with 21 computational systems medicine tools. Available at https://drugst.one, Drugst.One has significant potential for streamlining the drug discovery process, allowing researchers to focus on essential aspects of pharmaceutical treatment research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.471
Threshold uncertainty score0.505

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.042
GPT teacher head0.338
Teacher spread0.296 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2024
Admission routes2
Has abstractyes

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