Group Testing With Side Information via Generalized Approximate Message Passing
Bibliographic record
Abstract
Group testing can help maintain a widespread testing program using fewer resources amid a pandemic. In a group testing setup, we are given$n$samples, one per individual. Each individual is either infected or uninfected. These samples are arranged into$m < n$pooled samples, where each pool is obtained by mixing a subset of the$n$individual samples. Infected individuals are then identified using a group testing algorithm. In this article, we incorporate side information (SI) collected from contact tracing (CT) into nonadaptive/single-stage group testing algorithms. We generate different types of CT SI data by incorporating different possible characteristics of the spread of disease. These data are fed into a group testing framework based on generalized approximate message passing (GAMP). Numerical results show that our GAMP-based algorithms provide improved accuracy.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.022 | 0.073 |
| Meta-epidemiology (narrow) | 0.003 | 0.001 |
| Meta-epidemiology (broad) | 0.004 | 0.002 |
| Bibliometrics | 0.002 | 0.002 |
| Science and technology studies | 0.002 | 0.004 |
| Scholarly communication | 0.005 | 0.009 |
| Open science | 0.006 | 0.007 |
| Research integrity | 0.004 | 0.005 |
| Insufficient payload (model declined to judge) | 0.015 | 0.005 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".