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Record W4382134456 · doi:10.1002/2688-8319.12251

The importance of open data describing prey item species lists for endangered species

2023· article· en· W4382134456 on OpenAlex
Christopher J. Lortie, Jenna Braun, Rachel A. King, Michael Westphal

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueEcological Solutions and Evidence · 2023
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsYork University
FundersNatural Sciences and Engineering Research Council of CanadaU.S. Bureau of Land Management
KeywordsEndangered speciesMetadataData sharingOpen dataHabitatEcologyCritically endangeredEnvironmental resource managementComputer scienceData management planSet (abstract data type)Data scienceGeographyWorld Wide WebBiologyData miningData managementEnvironmental science

Abstract

fetched live from OpenAlex

Abstract Open data and code can be transformative tools in supporting evidence‐informed solutions for stakeholders. Data can take many forms of evidence in the discipline of applied ecology including tables, lists, maps and visualizations to name a few. Endangered and listed species are often a catalyst for research, conservation and planning. Here, a novel, open data set summarizing all the reported diet and prey items for all endangered, terrestrial dryland species listed in central California is provided as a case study. These data highlight the critical need for sharing data rapidly and transparently to support ecological solution science. Systematic review practices were used, data were compiled and the resulting data set was published in an open access, federated data repository using ecological metadata language and FAIR principles. The goal is to show that these data can now be used and analysed by applied ecologists and stakeholders to identify not only the habitat and spatial needs for the endangered species but to widen the conservation protection net to include prey species. Conserving viable habitat with higher likelihoods of prey presence will better support conservation of endangered species, and data describing reported species are a crucial first step. Interactive tables, local species lists and maps are simple tools that can now be developed regionally with open data such as these.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.367
Threshold uncertainty score0.995

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0010.003
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0060.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.431
GPT teacher head0.359
Teacher spread0.072 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it