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Record W4382538932 · doi:10.1101/2023.06.26.546579

Elevated concentrations of polymyxin B elicit a biofilm-specific resistance mechanism in <i>Vibrio cholerae</i>

2023· preprint· en· W4382538932 on OpenAlexaff
Julien Pauzé-Foixet, Marylise Duperthuy

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicVibrio bacteria research studies
Canadian institutionsUniversité de Montréal
Fundersnot available
KeywordsBiofilmVibrio choleraeMicrobiologyPolymyxin BBacteriaBiologyAntimicrobialAntibiotic resistancePolymyxinAntibioticsChemistry

Abstract

fetched live from OpenAlex

Abstract Vibrio cholerae can form biofilms both in the aquatic environment and in the human intestine, facilitating the release of hyper-infectious aggregates. Due to the increasing antibiotic resistance that impedes treatment of infections, alternatives need to be found. One of these alternatives is antimicrobial peptides, including polymyxin B (PmB), which is already used to treat infections caused by antibiotic-resistant bacteria. In this study, we first investigated the resistance of V. cholerae O1 El Tor strain A1552 to various antimicrobials under aerobic and anaerobic conditions. An increased resistance to PmB is observed in anaerobiosis, with a 3-fold increase in the dose required for 50% growth inhibition. We then studied the impact of the PmB on the formation and the degradation of V. cholerae biofilms to PmB. Our results show that PmB affects more efficiently biofilm formation under anaerobic conditions. On the other hand, preformed biofilms are susceptible to degradation by PmB at concentrations close to the minimum inhibitory concentration (MIC), resulting in approximately 50% reduction of the biomass. At higher concentrations, we observed less degradation and an opacification of the biofilm structures within 20 minutes post-treatment, suggesting a densification of the structure. This densification does not seem to result from the overexpression of matrix genes but rather from the release of DNA through cellular lysis, forming a protective shield that limits the penetration of the PmB into the biofilm. Importance Vibrio cholerae is an intestinal pathogen capable of forming biofilms and resisting antimicrobials both in the aquatic environment and during infection. Understanding and determining the resistance of V. cholerae to antimicrobials during the infection is crucial to improve patient care. During the infection and in the aquatic environment, V. cholerae form biofilms, structures that are known for their significance in antimicrobial resistance. In this study, we investigated the antimicrobial resistance of V. cholerae in both aerobic and anaerobic conditions, in their planktonic and biofilm forms. The major finding of this study is the identification of a resistance mechanism specific to elevated concentrations of polymyxin B, a last-resort antimicrobial used in the treatment of infections caused by multidrug-resistant Gram-negative bacteria. This resistance mechanism likely involves the lysis of bacterial cells on the surface of the biofilm, resulting in the release of DNA that provides a protective shield against PmB for bacteria within the biofilm matrix.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.244
Teacher spread0.224 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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