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Record W4382893784 · doi:10.1172/jci171431

Biomarkers in acute kidney injury: On the cusp of a new era?

2023· letter· en· W4382893784 on OpenAlexafffund
Mark Canney, Edward G. Clark, Swapnil Hiremath

Bibliographic record

VenueJournal of Clinical Investigation · 2023
Typeletter
Languageen
FieldMedicine
TopicNephrotoxicity and Medicinal Plants
Canadian institutionsOttawa HospitalUniversity of Ottawa
FundersUniversity of Ottawa
KeywordsAcute kidney injuryMedicineBiomarkerEtiologyIntensive care medicineInternal medicineCreatinineKidney diseaseNephrologyPathologyBioinformaticsBiology

Abstract

fetched live from OpenAlex

The search for a better biomarker of acute kidney injury (AKI) to replace serum creatinine has been long and elusive (1). The field of cardiology has utilized various tests through the years to indicate myocardial injury, progressing from creatine kinase to creatine kinase-myocardial band, to troponin, to troponin subtypes, to highly sensitive troponin subtypes. This evolution has improved diagnostics, risk-stratification, acute care processes, and prognostication for patients with suspected myocardial injury. Meanwhile, renal medicine has remained stuck in the creatinine first gear. The cynics may point out that the heart is a sophisticated, but, for all purposes, glorified muscle tissue, whereas the kidney is a much more elegant organ with filtering, secretory, synthetic, and endocrine functions to maintain homeostasis and much more. The kidney also has many more cell types than the heart, which complicates the matter of utilizing a simple injury biomarker like troponin. Nephrology research in the last few decades has, indeed, revealed a rich tapestry of candidate biomarkers, traversing cellular injury, cell cycle arrest, and repair, all helping to provide a more specific diagnosis beyond the identification of AKI (1, 2).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.011
metaresearch head score (Gemma)0.038
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.028
Threshold uncertainty score0.060

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0110.038
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0030.002
Bibliometrics0.0020.001
Science and technology studies0.0020.008
Scholarly communication0.0060.013
Open science0.0030.002
Research integrity0.0280.042
Insufficient payload (model declined to judge)0.0040.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.142
GPT teacher head0.411
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations18
Published2023
Admission routes2
Has abstractyes

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