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Record W4383711048 · doi:10.1038/s41597-023-02614-0

A comparison of neuroelectrophysiology databases

2023· review· en· W4383711048 on OpenAlexaff
Priyanka Subash, Alex Gray, Misque Boswell, Samantha L. Cohen, Rachael Garner, Sana Salehi, Calvary Fisher, Samuel Hobel, Satrajit Ghosh, Yaroslav O. Halchenko, Ben Dichter, Russell A. Poldrack, Christopher J. Markiewicz, Dora Hermes, Arnaud Delorme, Scott Makeig, Brendan Behan, Alana Sparks, Stephen R. Arnott, Zhengjia Wang, John F. Magnotti, Michael S. Beauchamp, Nader Pouratian, Arthur W. Toga, Dominique Duncan

Bibliographic record

VenueScientific Data · 2023
Typereview
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsBaycrest HospitalIndoc ResearchOntario Brain Institute
FundersNational Institutes of HealthNational Institute of Neurological Disorders and StrokeNational Institute of Mental HealthUniversity of Southern CaliforniaU.S. Department of Health and Human Services
KeywordsNeuroinformaticsData sharingComputer scienceData scienceData integrationField (mathematics)World Wide WebMetadataDatabase

Abstract

fetched live from OpenAlex

As data sharing has become more prevalent, three pillars - archives, standards, and analysis tools - have emerged as critical components in facilitating effective data sharing and collaboration. This paper compares four freely available intracranial neuroelectrophysiology data repositories: Data Archive for the BRAIN Initiative (DABI), Distributed Archives for Neurophysiology Data Integration (DANDI), OpenNeuro, and Brain-CODE. The aim of this review is to describe archives that provide researchers with tools to store, share, and reanalyze both human and non-human neurophysiology data based on criteria that are of interest to the neuroscientific community. The Brain Imaging Data Structure (BIDS) and Neurodata Without Borders (NWB) are utilized by these archives to make data more accessible to researchers by implementing a common standard. As the necessity for integrating large-scale analysis into data repository platforms continues to grow within the neuroscientific community, this article will highlight the various analytical and customizable tools developed within the chosen archives that may advance the field of neuroinformatics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.029
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Meta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.392
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.029
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0020.000
Bibliometrics0.0000.002
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0030.005
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.609
GPT teacher head0.497
Teacher spread0.112 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations22
Published2023
Admission routes1
Has abstractyes

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