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Record W4384925218 · doi:10.1002/mp.16615

Information fusion for fully automated segmentation of head and neck tumors from PET and CT images

2023· article· en· W4384925218 on OpenAlexafffund
Isaac Shiri, Mehdi Amini, Fereshteh Yousefirizi, Alireza Vafaei Sadr, Ghasem Hajianfar, Yazdan Salimi, Zahra Mansouri, Elnaz Jenabi, Mehdi Maghsudi, Ismini Mainta, Minerva Becker, Arman Rahmim, Habib Zaidi

Bibliographic record

VenueMedical Physics · 2023
Typearticle
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of CanadaSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungNational Science Foundation
KeywordsHead and neckMedical imagingNuclear medicineSegmentationPositron emission tomographyMedicineMedical physicsImage registrationImage fusionImage segmentationRadiologyComputer visionComputer science

Abstract

fetched live from OpenAlex

Abstract Background PET/CT images combining anatomic and metabolic data provide complementary information that can improve clinical task performance. PET image segmentation algorithms exploiting the multi‐modal information available are still lacking. Purpose Our study aimed to assess the performance of PET and CT image fusion for gross tumor volume (GTV) segmentations of head and neck cancers (HNCs) utilizing conventional, deep learning (DL), and output‐level voting‐based fusions. Methods The current study is based on a total of 328 histologically confirmed HNCs from six different centers. The images were automatically cropped to a 200 × 200 head and neck region box, and CT and PET images were normalized for further processing. Eighteen conventional image‐level fusions were implemented. In addition, a modified U2‐Net architecture as DL fusion model baseline was used. Three different input, layer, and decision‐level information fusions were used. Simultaneous truth and performance level estimation (STAPLE) and majority voting to merge different segmentation outputs (from PET and image‐level and network‐level fusions), that is, output‐level information fusion (voting‐based fusions) were employed. Different networks were trained in a 2D manner with a batch size of 64. Twenty percent of the dataset with stratification concerning the centers (20% in each center) were used for final result reporting. Different standard segmentation metrics and conventional PET metrics, such as SUV, were calculated. Results In single modalities, PET had a reasonable performance with a Dice score of 0.77 ± 0.09, while CT did not perform acceptably and reached a Dice score of only 0.38 ± 0.22. Conventional fusion algorithms obtained a Dice score range of [0.76–0.81] with guided‐filter‐based context enhancement (GFCE) at the low‐end, and anisotropic diffusion and Karhunen–Loeve transform fusion (ADF), multi‐resolution singular value decomposition (MSVD), and multi‐level image decomposition based on latent low‐rank representation (MDLatLRR) at the high‐end. All DL fusion models achieved Dice scores of 0.80. Output‐level voting‐based models outperformed all other models, achieving superior results with a Dice score of 0.84 for Majority_ImgFus, Majority_All, and Majority_Fast. A mean error of almost zero was achieved for all fusions using SUV peak , SUV mean and SUV median . Conclusion PET/CT information fusion adds significant value to segmentation tasks, considerably outperforming PET‐only and CT‐only methods. In addition, both conventional image‐level and DL fusions achieve competitive results. Meanwhile, output‐level voting‐based fusion using majority voting of several algorithms results in statistically significant improvements in the segmentation of HNC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.929
Threshold uncertainty score0.262

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.303
Teacher spread0.294 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designOther design
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations18
Published2023
Admission routes2
Has abstractyes

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