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Record W4385417599 · doi:10.1002/edn3.455

Differential ecological adaptation of diverse <i>Chaetoceros</i> species revealed by metabarcoding analysis

2023· article· en· W4385417599 on OpenAlexafffund
Zongmei Cui, Shuya Liu, Qing Xu, Yongfang Zhao, Nansheng Chen

Bibliographic record

VenueEnvironmental DNA · 2023
Typearticle
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsSimon Fraser University
FundersChinese Academy of SciencesNatural Sciences and Engineering Research Council of CanadaNational Natural Science Foundation of China
KeywordsChaetocerosBiologyEcologyPhytoplanktonBayPlanktonAdaptation (eye)Algal bloomMarine ecosystemEcosystemOceanographyNutrient

Abstract

fetched live from OpenAlex

Abstract Chaetoceros is a species‐rich genus of marine planktonic diatoms that play an important role in marine ecosystems both as primary producers and as species causing harmful algal blooms (HABs). In this study, we analyzed the composition and dynamic changes in Chaetoceros species in Jiaozhou Bay, China, using metabarcoding analysis of time‐series samples for the first time. Through analyzing samples collected monthly from 12 sampling sites, 25 species of Chaetoceros were detected, including nine species that were not previously reported in this ocean region, highlighting the strength of metabarcoding analysis of Chaetoceros species. Many Chaetoceros species showed strong seasonal preferences, with some species dominating in winter and spring, while others showing prominence in summer and autumn, suggesting sophisticated differential ecological adaptation. With the construction of more comprehensive datasets of reference barcodes, metabarcoding analysis could be used as the next‐generation method in ecological research on Chaetoceros species and phytoplankton species of other genera.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.843
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0430.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.211
Teacher spread0.192 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations22
Published2023
Admission routes2
Has abstractyes

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