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Record W4385420944 · doi:10.1007/s10228-023-00924-2

How complex is the hidden species diversity of the teleost Plotosus genus?

2023· article· en· W4385420944 on OpenAlexaff
Elsa Froufe, André Gomes‐dos‐Santos, Ana Matos, Jonathan M. Wilson, Salman Malakpourkolbadinezhad, Daniel Duarte Pereira, Randal Singer, L. Filipe C. Castro

Bibliographic record

VenueIchthyological Research · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicIdentification and Quantification in Food
Canadian institutionsWilfrid Laurier University
Fundersnot available
KeywordsBiologyMonophylySpecies complexLineage (genetic)Intraspecific competitionEcologyRange (aeronautics)ZoologyPhylogeographyBiogeographyGenusCytochrome c oxidase subunit IIndo-PacificMediterranean climateMediterranean seaHabitatPhylogeneticsPhylogenetic treeClade

Abstract

fetched live from OpenAlex

Abstract The striped eel catfish, Plotosus lineatus was first described by Thunberg in 1787 from the Indo-Pacific region in the East Indian Ocean. Since then, the species has been recorded in various marine and brackish habitats in Japan, southern Korea, the Ogasawara Islands, Australia, Lord Howe Island, Palau and Yap in Micronesia, East Africa to Samoa, Madagascar, Red Sea and the Persian Gulf. Occurrences of this species have also been registered in the Mediterranean Sea, a non-native location, indicating a possible biological invasion event. Despite its long history, the taxonomic status of the P. lineatus species complex remains puzzling and uncertain. Here, we analysed all the available mitochondrial cytochrome c oxidase subunit 1 sequences (NCBI and BOLD) from specimens covering the current known distribution range, in an attempt to clarify the evolutionary relationships of different lineages within this species. We deduce nine monophyletic Lineages - I–IX , of P. lineatus with Kimura-2P distances ranging from 2% to 16%, with a mean intraspecific distance of 6%. Strikingly, Lineage V is composed uniquely of Mediterranean-captured individuals, with an unknown evolutionary origin. These findings strongly suggest the need for a careful species taxonomic reassessment. Some Lineages are composed of individuals from specific geographic locations (e.g., Australia and Indonesia), while others include specimens from broader geographic areas (e.g., almost all Indo-Pacific coastline). Additionally, several deposited sequences are most likely the result of morphology-based misidentifications. Due to the biological invasive potential, as well as the use of the species as a valuable physiology model, the P. lineatus species complex requires further attention. Overall our study offers a clear framework for future comparative studies of striped eel catfish individuals captured from different ecosystems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.560
Threshold uncertainty score0.562

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.312
GPT teacher head0.387
Teacher spread0.075 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2023
Admission routes1
Has abstractyes

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