MétaCan
Menu
Back to cohort
Record W4385572006 · doi:10.18653/v1/2023.bionlp-1.46

GRASUM at BioLaySumm Task 1: Background Knowledge Grounding for Readable, Relevant, and Factual Biomedical Lay Summaries

2023· article· en· W4385572006 on OpenAlexaff
Domenic Rosati

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldComputer Science
TopicTopic Modeling
Canadian institutionsDalhousie University
Fundersnot available
KeywordsAutomatic summarizationReadabilityComputer scienceRelevance (law)Task (project management)GroundInformation retrievalData scienceEngineering

Abstract

fetched live from OpenAlex

Communication of scientific findings to the public is important for keeping non-experts informed of developments such as life-saving medical treatments.However, generating readable lay summaries from scientific documents is challenging, and currently, these summaries suffer from critical factual errors.One popular intervention for improving factuality is using additional external knowledge to provide factual grounding.However, it is unclear how these grounding sources should be retrieved, selected, or integrated, and how supplementary grounding documents might affect the readability or relevance of the generated summaries.We develop a simple method for selecting grounding sources and integrating them with source documents.We then use the Bio-LaySumm summarization dataset to evaluate the effects of different grounding sources on summary quality.We found that grounding source documents improves the relevance and readability of lay summaries but does not improve factuality of lay summaries.This continues to be true in zero-shot summarization settings where we hypothesized that grounding might be even more important for factual lay summaries 1 .1 https://github.com/domenicrosati/improving-lay-factuality-with-retreivalLay Summary: [Messenger RNAs carry the instructions necessary to synthesize proteins that do work for the cell]background In this work , we surveyed mRNA ends from 10 , 000 genes in immune cells from genetically distinct human individuals.Abstracts: Virtually all messenger RNAs (mRNAs) in eukaryotes are cleaved and polyadenylated at their 3 ends.UMLS: RNA is unique among biological macromolecules in that it can encode genetic information.Wiki Simple: Messenger RNA carries a genetic message from the DNA to the protein making machinery of the cell.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.009
metaresearch head score (Gemma)0.045
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.031
Threshold uncertainty score0.104

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0090.045
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0080.003
Science and technology studies0.0020.001
Scholarly communication0.0050.005
Open science0.0030.007
Research integrity0.0040.003
Insufficient payload (model declined to judge)0.0310.022

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.061
GPT teacher head0.303
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes1
Has abstractyes

Explore more

Same topicTopic ModelingFrench-language works237,207