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Record W4385765037 · doi:10.1101/2023.08.10.552443

Ancient Mongolian aurochs genomes reveal sustained introgression and management in East Asia

2023· preprint· en· W4385765037 on OpenAlexafffund
Katherine Brunson, Kelsey E. Witt, S. MONGE, Sloan R. Williams, David Peede, Davaakhuu Odsuren, Dashzeveg Bukhchuluun, Asa Cameron, Paul Szpak, Chunag Amartuvshin, William Honeychurch, Joshua Wright, Sarah Pleuger, Erdene Myagmar, Dashtseveg Tumen, Leland Rogers, Dorjpurev Khatanbaatar, Byambatseren Batdalai, Ganbaatar Galdan, Lisa Janz

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldEnvironmental Science
TopicRangeland Management and Livestock Ecology
Canadian institutionsThe Scarborough HospitalUniversity of TorontoTrent University
FundersSocial Sciences and Humanities Research Council of CanadaNational Center for Advancing Translational SciencesTrent UniversityBrown UniversityAmerican Philosophical SocietyAmerican Center for Mongolian StudiesUniversity of Illinois at Urbana-ChampaignWenner-Gren FoundationNational Geographic SocietyNational Endowment for the HumanitiesNational Institutes of HealthRush UniversityYale UniversityNational Science Foundation
KeywordsIntrogressionEast AsiaGeographyGenomeEvolutionary biologyBiologyArchaeologyGeneticsGeneChina

Abstract

fetched live from OpenAlex

Abstract Societies in East Asia have utilized domesticated cattle for over 5000 years, but the genetic history of cattle in East Asia remains understudied. Genome-wide analyses of 23 ancient Mongolian cattle reveal that East Asian aurochs and ancient East Asian taurine cattle are closely related, but neither are closely related to any modern East Asian breeds. We observe binary variation in aurochs diet throughout the early Neolithic, and genomic evidence shows millennia of sustained male-dominated introgression. We identify a unique connection between ancient Mongolian aurochs and the European Hereford breed. These results point to the likelihood of human management of aurochs in Northeast Asia prior to and during the initial adoption of taurine cattle pastoralism. One-Sentence Summary Ancient interbreeding of East Asian aurochs and cattle suggests management, but leaves no signature in modern eastern breeds.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.210
Teacher spread0.199 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2023
Admission routes2
Has abstractyes

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Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicRangeland Management and Livestock EcologyFrench-language works237,207