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In-silico Identification of Dexamethasone-similar Compounds AgainstSARS-Cov-2 Spike Protein: A Drug Repurposing Approach

2023· article· en· W4385836498 on OpenAlexaff
Yamini Pathak, Vishwas Tripathi, Ihosvany Camps, Faizan Abul Qais, Amaresh Mishra

Bibliographic record

VenueLetters in Organic Chemistry · 2023
Typearticle
Languageen
FieldComputer Science
TopicComputational Drug Discovery Methods
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsDrug repositioningIn silicoDrugRepurposingComputational biologyDocking (animal)Drug developmentHost (biology)Spike (software development)DexamethasoneDrug discoveryCoronavirusSpike ProteinViral replicationCoronavirus disease 2019 (COVID-19)VirusPandemicSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)ChemistryVirologyPharmacologyBiologyBioinformaticsInfectious disease (medical specialty)MedicineDiseaseBiochemistryComputer scienceGeneticsGene

Abstract

fetched live from OpenAlex

Abstract: To identify potential drug candidates for the treatment of COVID-19 using a computational method. The recent pandemic of COVID-19 is observed as not less than a natural calamity of humankind and raised serious concerns for its immediate management. The continued spread of coronavirus disease across the globe poses a significant threat to human health. Out of this, the application of Dexamethasone has been correlated with reduced mortality in COVID-19 cases. This study sheds new light on the pharmacological potential of Dexamethasone and similar compounds in mitigating SARSCoV2 infection. : In this study, we explored Dexamethasone-similar compounds, which can modulate the binding of SARS-CoV-2 spike protein to the host and TH17 programming in the host using a computer-aided drug repurposing method. The docking studies indicate that Desoximetasone can bind to the spike proteins of SARS-CoV-2, which are crucial for viral attachment and entry into host cells. By competing with these spike proteins, Desoximetasone may interfere with the virus's ability to attach to and enter host cells, potentially inhibiting viral replication and spread. The results from molecular dynamic simulation analysis further support this notion by demonstrating that Desoximetasone has a strong interaction with the binding sites of the spike protein. Experimental validation through in vitro studies and clinical trials is needed to evaluate its potential as a treatment option for COVID-19. Together, these findings revealed the underlying mechanism of how Desoximetasone can influence the fate of the virus in the host and advocated its anti-viral potential.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.123
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.002
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.269
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2023
Admission routes1
Has abstractyes

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