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Record W4385984014 · doi:10.1101/2023.08.17.553719

Small molecule inhibitors of transcriptional Cyclin Dependent Kinases impose HIV-1 latency, presenting “block and lock” treatment strategies

2023· preprint· en· W4385984014 on OpenAlexafffund
Riley M. Horvath, Zabrina L. Brumme, Ivan Sadowski

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldImmunology and Microbiology
TopicHIV Research and Treatment
Canadian institutionsAIDS VancouverSimon Fraser UniversityUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health ResearchMichael Smith Health Research BC
KeywordsKinaseLatency (audio)Cyclin-dependent kinaseP-TEFbDiscontinuationBiologyCancer researchCell biologyVirologyChemistryPharmacologyCell cycleMedicineCellBiochemistryInternal medicineComputer science

Abstract

fetched live from OpenAlex

Abstract Antiretroviral therapy is not a cure for HIV-1 as viral rebound ensues immediately following discontinuation. The block and lock therapeutic strategy seeks to enforce proviral latency and durably suppress viremic reemergence in the absence of antiretroviral therapy. Transcriptional Cyclin Dependent Kinase activity regulates LTR transcription, however, the effect and therapeutic potential of inhibiting these kinases for enforcing HIV-1 latency remains unrecognized. Using newly developed small molecule inhibitors that are highly selective for either CDK7 (YKL-5-124), CDK9 (LDC000067), or CDK8/19 (Senexin A), we found that targeting any one of these kinases prevented HIV-1 expression at concentrations that showed no toxicity. Furthermore, although CDK7 inhibition induced cell cycle arrest, inhibition of CDK9 and/or CDK8/19 did not. Of particular interest, proviral latency as induced by CDK8/19 inhibition was maintained following drug removal while CDK9 inhibitor induced latency rebounded within 24 hrs of discontinuation. Our results indicate that the Mediator complex kinases, CDK8/CDK19, are attractive block and lock targets while sole disruption of P-TEFb is unlikely to be efficacious.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.242
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes2
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicHIV Research and Treatment→French-language works237,207→