MétaCan
Menu
Back to cohort

Characterization of equilibrative nucleoside transport of the pancreatic cancer cell line: Panc-1

2023· article· en· W4386253793 on OpenAlexafffund
Sıla Appak Başköy, Amardeep Khunkhuna, Bianca Scuric, Zlatina Tarmakova, Imogen R. Coe

Bibliographic record

VenueTurkish Journal of Pharmaceutical Sciences · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdenosine and Purinergic Signaling
Canadian institutionsToronto Metropolitan University
FundersNatural Sciences and Engineering Research Council of CanadaPublic Health Agency of Canada
KeywordsNucleosideGemcitabinePancreatic cancerMolecular biologyCell cultureWestern blotNucleoside analogueChemistryHypoxanthineUridineCytidineBiologyBiochemistryCancerMedicineInternal medicineRNA

Abstract

fetched live from OpenAlex

Objectives: Gemcitabine, a first-line chemotherapeutic nucleoside analog drug (NAD) for pancreatic cancer, faces limitations due to drug resistance.Characterizing pancreatic cancer cells' transport characteristics may help identify the mechanisms behind drug resistance, and develop more effective therapeutic strategies.Therefore, in this study, we aimed to determine the nucleoside transport properties of Panc-1 cells, one of the commonly used pancreatic adenocarcinoma cell lines.Materials and Methods: To assess the presence of equilibrative nucleoside transporter-1 (ENT-1) in Panc-1 cells, we performed immunofluorescence staining, western blot analysis, and S-(4-nitrobenzyl)-6-thioinosine (NBTI) binding assays.We also conducted standard uptake assays to measure the sodium-independent uptake of [3H]-labeled chloroadenosine, hypoxanthine, and uridine.In addition, we determined the half-maximal inhibitory concentration (IC 50 ) of gemcitabine.Statistical analyses were performed using GraphPad Prism version 8.0 for Windows.Results: The sodium-independent uptake of [3H]-labeled chloroadenosine, hypoxanthine, and uridine was measured using standard uptake assays, and the transport rates were determined as 111.1 3.4 pmol/mg protein/10 s, 62.5 4.8 pmol/mg protein/10 s, and 101.3 2.5 pmol/mg protein/10 s, respectively.Furthermore, the presence of ENT-1 protein was confirmed using NBTI binding assays (B max 1.52 0.1 pmol/mg protein; equilibrium dissociation constant 0.42 0.1 nM).Immunofluorescence assays and western blot analysis also revealed ENT-1 in Panc-1 cells.The determined IC 50 of gemcitabine in Panc-1 cells was 2 M, indicating moderate sensitivity.Conclusion: These results suggest that Panc-1 is a suitable preclinical cellular model for studying NAD transport properties and potential therapies in pancreatic cancer and pharmaceutical research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.181

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.334
Teacher spread0.297 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes2
Has abstractyes

Explore more

Same venueTurkish Journal of Pharmaceutical SciencesSame topicAdenosine and Purinergic SignalingFrench-language works237,207