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Characterization of equilibrative nucleoside transport of the pancreatic cancer cell line: Panc-1

2023· article· en· W4386253793 on OpenAlexafffund
Sıla Appak Başköy, Amardeep Khunkhuna, Bianca Scuric, Zlatina Tarmakova, Imogen R. Coe

Bibliographic record

VenueTurkish Journal of Pharmaceutical Sciences · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdenosine and Purinergic Signaling
Canadian institutionsToronto Metropolitan University
FundersNatural Sciences and Engineering Research Council of CanadaPublic Health Agency of Canada
KeywordsNucleosideGemcitabinePancreatic cancerMolecular biologyCell cultureWestern blotNucleoside analogueChemistryHypoxanthineUridineCytidineBiologyBiochemistryCancerMedicineInternal medicineRNA

Abstract

fetched live from OpenAlex

Objectives: Gemcitabine is a nucleoside analog drug used as a first-line chemotherapeutic agent against pancreatic cancer.The characterization of cell lines is crucial for understanding drug resistance development in pancreatic cancer.In this study, we aimed to determine the nucleoside transport properties of Panc-1 cells, one of the commonly used pancreatic adenocarcinoma cell lines. Materials and Methods:To assess the presence of Equilibrative nucleoside transporter 1 (ENT1) in Panc-1 cells, we performed immunofluorescence staining, western blot analysis, and S-(4-nitrobenzyl)-6-thioinosine (NBTI) binding assays.We also conducted standard uptake assays to measure the sodium-independent uptake of [3H]-labeled chloroadenosine, hypoxanthine, and uridine.Additionally, we determined the half-maximal inhibitory concentration (IC50) of gemcitabine.Statistical analyses were performed using GraphPad Prism version 8.0 for Windows.Results: Sodium-independent uptake of [3H]-labeled chloroadenosine, hypoxanthine, and uridine was measured using standard uptake assays, and the transport rates were determined as 111.1 ± 3.4 pmol/mg protein/10 secs, 62.5 ± 4.8 pmol/mg protein/10 secs, and 101.3 ± 2.5 pmol/mg protein/10 secs, respectively.Furthermore, the presence of ENT1 protein was confirmed using S-(4-nitrobenzyl)-6-thioinosine (NBTI) binding assays (Bmax 1.52 ± 0.1 pmol/mg protein; Kd 0.42 ± 0.1 nM).Immunofluorescence assays and western blot analysis also showed the presence of ENT-1 in Panc-1 cells.The determined IC50 of gemcitabine in Panc-1 cells was 2 μM, indicating moderate sensitivity.Conclusion: These results suggest that Panc-1 is a suitable preclinical cellular model for studying nucleoside analog drug transport properties and potential therapies in pancreatic cancer and pharmaceutical research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.334
Teacher spread0.297 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations2
Published2023
Admission routes2
Has abstractyes

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