Loss of H3K27me3 in meningiomas: an independent marker for CNS WHO grade 2?
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Bibliographic record
Abstract
Accurate risk stratification for meningioma patients is challenging, particularly with borderline histology between WHO grade 1 and 2. Several molecular approaches have been proposed, but cost limit their availability. A promising marker to identify cases at higher risk of recurrence is loss of H3K27 trimethylation. However, there were insufficient data yet to incorporate it as a grading criterion into the latest WHO classification of CNS tumors 2021 (CNS5). Only 2 studies are available showing a significant association with progression-free survival, one across all WHO grades1 and one focusing on anaplastic cases.2 After the meningioma chapter for the novel WHO classification had been prepared for release, several novel studies have been published,2–6 supporting the prognostic impact of H3K27me3. Yet, none of these studies provided clear data on the clinical value to distinguish “true” grade 1 from “true” grade 2 cases, that is, cases that do not fulfill the current grade 2 criteria but still tend to early recurrence. We therefore leveraged the 2 largest of these published studies to investigate whether H3K27 trimethylation may robustly identify morphologically grade 1 tumors with outcome identical to the average grade 2 tumors. The combined cohort comprises 866 grade 1 and 317 grade 2 primary meningiomas. Loss of H3K27me3 was observed in 3.1% (27/866 cases) and 11.4% (36/317 cases) of grade 1 and 2 tumors, respectively. A median follow-up of 39 months revealed 219 recurrences. Trimethylation loss was associated with significantly shorter recurrence-free survival (RFS) among grade 2 meningiomas, but not within grade 1 tumors. Likewise, comparing grade 1 meningiomas without trimethylation to all grade 2 tumors or grade 2 tumors with retained H3K27me3, no significant difference in clinical outcome depending on trimethylation was seen (Figure 1). Hence, even this large data set does not provide conclusive evidence for trimethylation status as grading criterion. After pooled analysis of these 2 studies that assessed trimethylation status in a binary manner, we also included data from a third cohort (Nassiri et al.). As this used a 3-tiered approach with a separate category for ambiguous cases, these ambiguous samples were excluded. Adding the remaining data to the 2 previous cohorts supported the conclusion of the previous cohorts of no clear signal for H3K27me3 status in otherwise WHO grade 1 cases (data not shown). Recurrence-free survival of grade 1 and 2 meningiomas stratified for H3K27me3 status (A: Kaplan–Meier curve; B: effects in forest plot) shows a significantly higher risk of recurrence for loss within grade 2 tumors but no significant effect within grade 1 meningiomas or between grade 1 with loss and grade 2 tumors. A limitation of all studies is enrichment for high-grade meningiomas,1–6 and limited follow-up for grade 1 meningiomas. Therefore, the “true” incidence of H3K27me3 loss may even be below 4.7%.3 Consequently, available statistical analyses are likely underpowered to show distinctions within different WHO grades: The incidence among grade 1 tumors was reported to be as low as 3.1% in 1001 tumors3; thus, H3K27me3 data of 1000 additional grade 1 meningiomas will likely yield 30 cases with loss. Moreover, the low rate of recurrence among grade 1 limits the statistical power for RFS. However, within grade 2 meningiomas the trimethylation loss in our data clearly shows a significantly shorter RFS. Whether such cases may even qualify for grade 3 needs to be further evaluated in comparison to a larger cohort of grade 3 tumors. While not the focus of this study, at least our data yielded no conclusive indication that grade 2 cases with H3K27me3 loss (n = 36) should be allotted to grade 3 (n = 31, HR 0.6, P = .1, not shown). Still, this further suggests a general biological relevance in meningioma, and that the prognostic readout may just remain statistically undetectable in grade 1 as of yet. In conclusion, further investigation of the prognostic potential of H3K27me3 in a larger multicenter effort is necessary. Awareness of the variability of staining and standardization of assessment is warranted to derive robust conclusions from this additional data. Yet, since this immunohistochemical assay is widely established, it may be worthwhile including it in routine diagnostic workup of meningiomas and to prospectively identify and follow-up on cases with a clear H3K27me3 loss. None declared. The authors declare that they have no conflicts of interest. Study concept: F.B., G.T., G.Z., F.S.; data acquisition: F.B., C.-K.F., P.P., J.S., F.N., G.Z., J.Z.W., G.T., F.S.; data analysis: F.B., J.S., T.H., F.N., G.Z., J.Z.W., G.T., F.S.; data interpretation: F.B., J.S., T.H., F.N., G.Z., J.Z.W., G.T., F.S.; writing of first draft: F.B., F.S.; all authors reviewed and approved the final version of the manuscript.
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.000 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it