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Record W4386423688 · doi:10.1038/s41477-023-01459-0

Ectopic callose deposition into woody biomass modulates the nano-architecture of macrofibrils

2023· article· en· W4386423688 on OpenAlexaff
Matthieu Bourdon, Jan J. Łyczakowski, Rosalie Cresswell, Sam Amsbury, Francisco Vilaplana, Marie-Joo Le Guen, Nadège Follain, Raymond Wightman, Chang Su, Fulgencio Alatorre‐Cobos, Maximilian Ritter, Aleksandra Liszka, Oliver M. Terrett, Shri Ram Yadav, Anne Vatén, Kaisa Nieminen, Gugan Eswaran, Juan Alonso‐Serra, Karin H. Müller, Dinu Iuga, Pál Miskolczi, Lothar Kalmbach, Sofía Otero, Ari Pekka Mähönen, Rishikesh P. Bhalerao, Vincent Bulone, Shawn D. Mansfield, Stefan Hill, Ingo Burgert, Johnny Beaugrand, Yoselin Benitez‐Alfonso, R. Dupree, Paul Dupree, Ykä Helariutta

Bibliographic record

VenueNature Plants · 2023
Typearticle
Languageen
FieldMaterials Science
TopicAdvanced Cellulose Research Studies
Canadian institutionsUniversity of British Columbia
FundersBiotechnology and Biological Sciences Research CouncilSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
KeywordsLigninBiomass (ecology)BiorefineryHemicelluloseCalloseCelluloseLignocellulosic biomassCell wallDeposition (geology)Pulp and paper industrySecondary cell wallBotanyMaterials scienceChemistryEnvironmental scienceRaw materialAgronomyBiologyOrganic chemistryEngineering

Abstract

fetched live from OpenAlex

Plant biomass plays an increasingly important role in the circular bioeconomy, replacing non-renewable fossil resources. Genetic engineering of this lignocellulosic biomass could benefit biorefinery transformation chains by lowering economic and technological barriers to industrial processing. However, previous efforts have mostly targeted the major constituents of woody biomass: cellulose, hemicellulose and lignin. Here we report the engineering of wood structure through the introduction of callose, a polysaccharide novel to most secondary cell walls. Our multiscale analysis of genetically engineered poplar trees shows that callose deposition modulates cell wall porosity, water and lignin contents and increases the lignin-cellulose distance, ultimately resulting in substantially decreased biomass recalcitrance. We provide a model of the wood cell wall nano-architecture engineered to accommodate the hydrated callose inclusions. Ectopic polymer introduction into biomass manifests in new physico-chemical properties and offers new avenues when considering lignocellulose engineering.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.396

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.291
Teacher spread0.281 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations33
Published2023
Admission routes1
Has abstractyes

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