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Predicting New-onset Exertional and Resting Hypoxemia in Fibrotic Interstitial Lung Disease

2023· article· en· W4386523631 on OpenAlexaffabout
Ferhan Saleem, Christopher J. Ryerson, Nandini Sarma, Kerri A. Johannson, Veronica Marcoux, Jolene H. Fisher, Deborah Assayag, H. Manganas, Nasreen Khalil, Julie Morisset, Ian Glaspole, Nicole Goh, Justin M. Oldham, Gerard Cox, Charlene D. Fell, Andrea S. Gershon, Andrew J. Halayko, Nathan Hambly, S.D. Lok, Shane Shapera, Teresa To, Pearce Wilcox, Alyson W. Wong, Martin Kolb, Yet H. Khor

Bibliographic record

VenueAnnals of the American Thoracic Society · 2023
Typearticle
Languageen
FieldMedicine
TopicInterstitial Lung Diseases and Idiopathic Pulmonary Fibrosis
Canadian institutionsSickKids FoundationUniversity of ManitobaHealth Sciences CentreUniversity of TorontoSunnybrook Health Science CentreMcMaster UniversityHospital for Sick ChildrenUniversity of SaskatchewanUniversity of CalgaryCentre Hospitalier de l’Université de MontréalInstitute for Clinical Evaluative SciencesMcGill UniversityUniversity of British Columbia
FundersNational Heart, Lung, and Blood Institute
KeywordsMedicineHypoxemiaInterstitial lung diseaseCohortCardiologyInternal medicineIdiopathic pulmonary fibrosisVital capacityDiffusing capacityProportional hazards modelHazard ratioLungConfidence intervalLung function

Abstract

fetched live from OpenAlex

Abstract Rationale Hypoxemia in fibrotic interstitial lung disease (ILD) indicates disease progression and is of prognostic significance. The onset of hypoxemia signifies disease progression and predicts mortality in fibrotic ILD. Accurately predicting new-onset exertional and resting hypoxemia prompts appropriate patient discussion and timely consideration of home oxygen. Objectives We derived and externally validated a risk prediction tool for both new-onset exertional and new-onset resting hypoxemia. Methods This study used ILD registries from Canada for the derivation cohort and from Australia and the United States for the validation cohort. New-onset exertional and resting hypoxemia were defined as nadir oxyhemoglobin saturation < 88% during 6-minute-walk tests, resting oxyhemoglobin saturation < 88%, or the initiation of ambulatory or continuous oxygen. Candidate predictors included patient demographics, ILD subtypes, and pulmonary function. Time-varying Cox regression was used to identify the top-performing prediction model according to Akaike information criterion and clinical usability. Model performance was assessed using Harrell’s C-index and goodness-of-fit (GoF) likelihood ratio test. A categorized risk prediction tool was developed. Results The best-performing prediction model for both new-onset exertional and new-onset resting hypoxemia included age, body mass index, a diagnosis of idiopathic pulmonary fibrosis, and percent predicted forced vital capacity and diffusing capacity of carbon monoxide. The risk prediction tool exhibited good performance for exertional hypoxemia (C-index, 0.70; GoF, P = 0.85) and resting hypoxemia (C-index, 0.77; GoF, P = 0.27) in the derivation cohort, with similar performance in the validation cohort except calibration for resting hypoxemia (GoF, P = 0.001). Conclusions This clinically applicable risk prediction tool predicted new-onset exertional and resting hypoxemia at 6 months in the derivation cohort and a diverse validation cohort. Suboptimal GoF in the validation cohort likely reflected overestimation of hypoxemia risk and indicated that the model is not flawed because of underestimation of hypoxemia.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.015
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.027

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.015
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.059
GPT teacher head0.377
Teacher spread0.318 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations12
Published2023
Admission routes2
Has abstractyes

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