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Record W4386743595 · doi:10.26434/chemrxiv-2023-v9841

DELFI: A computer oracle for recommending the best density functional for excited states calculations

2023· preprint· en· W4386743595 on OpenAlexafffund
Davide Avagliano, Marta Skreta, Sebastian Arellano-Rubach, Alán Aspuru‐Guzik

Bibliographic record

VenueChemRxiv · 2023
Typepreprint
Languageen
FieldMaterials Science
TopicMachine Learning in Materials Science
Canadian institutionsUniversity of Toronto
FundersCanada First Research Excellence FundNatural Resources CanadaUniversity of TorontoAlliance de recherche numérique du CanadaGovernment of Ontario
KeywordsOracleDensity functional theoryExcited stateComputer scienceInferenceEstimatorManifold (fluid mechanics)Ranking (information retrieval)Theoretical computer scienceAlgorithmStatistical physicsArtificial intelligenceComputational chemistryMathematicsChemistryQuantum mechanicsPhysics

Abstract

fetched live from OpenAlex

Density functional theory is known as the workhorse of computational quantum chemistry. One of its main limitations, if not the main one, is that choosing the right functional to employ is a non-trivial task left for human experts. The choice is particularly hard for excited states calculations, when using the time-dependent formulation of DFT (TD-DFT). This is not only due to the approximations and limitations of the method, but also because the photophysical properties of a molecule are defined by a manifold of states that all need to be properly described in a balanced manner to obtain an accurate photochemical picture. This includes not only the relative energy of the states, but also capturing the correct character, order and intensity of the transitions. In this work, we developed a scoring system to quantitatively define the accuracy of an excited states calculation by simultaneously considering at the same time all these properties of a manifold of states. The scoring system is generalizable to any level of theory, we here applied it to a large dataset of organic molecules, calculating 38 scores for as many common functionals of different type and rung, against a higher accuracy method. We used these scores to train a graph attention neural network that is used to predict the 38 scores for molecules represented as 2D graphs. We call this oracle DELFI (Data-driven EvaLuation of Functionals by Inference), which can be used to predict the ranking of functionals to calculate optical properties of organic molecules. A corresponding web application allows to easily run DELFI and analyze the results, alleviating the hurdle of choosing the right functional for TD-DFT calculations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.018
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.023
Threshold uncertainty score0.077

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.018
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.001
Science and technology studies0.0000.000
Scholarly communication0.0020.002
Open science0.0020.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0230.007

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.092
GPT teacher head0.330
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes2
Has abstractyes

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