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Record W4386752467 · doi:10.26434/chemrxiv-2023-j1szt

Navigating Materials Space with ML-Generated Electronic Fingerprints

2023· preprint· en· W4386752467 on OpenAlex
Ihor Neporozhnii, Zhibo Wang, Rochan Bajpai, Camilo Ariel Jaime Gomez, Nirvik Chakraborty, Isaac Tamblyn, Oleksandr Voznyy

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueChemRxiv · 2023
Typepreprint
Languageen
FieldMaterials Science
TopicMachine Learning in Materials Science
Canadian institutionsUniversity of OttawaUniversity of Toronto
FundersNatural Sciences and Engineering Research Council of CanadaAlliance de recherche numérique du Canada
KeywordsElectronic structureComputer scienceSimilarity (geometry)Fingerprint (computing)Property (philosophy)Cluster analysisCluster (spacecraft)Space (punctuation)Field (mathematics)Data miningMaterials scienceArtificial intelligenceComputational chemistryChemistryMathematics

Abstract

fetched live from OpenAlex

In the field of materials science, finding materials with specific properties is a major challenge due to the vastness of the search space, which makes random exploration prohibitively expensive. A more practical approach is to search for new materials within the proximity of known compounds that possess the desired property. In such an approach, fingerprinting methods are often used to measure the similarity of materials and group them into clusters. Such methods rely exclusively on the material’s structure to generate the fingerprint, which often does not correspond to clustering by desired property. To address this issue, electronic structure fingerprints that use properties such as the density of states (DOS) and band structure were proposed as an alternative. However, the computational cost of electronic structure calculations for tens of thousands of materials remains too high for rapid exploration. In this work, we developed a Graph Neural Network (GNN) ProDosNet which is trained on orbital Projected Density of States (PDOS) data and capable of predicting the electronic structure of materials at extremely low computational cost. With this model, we were able to generate PDOS fingerprints for all compounds present in the Materials Projects Database and cluster them by the similarity of their orbital PDOS, and therefore electronic properties. We demonstrate that using PDOS fingerprints allows finding materials that have similar electronic properties but drastically different structures.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Scholarly communication, Insufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0030.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0020.002
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.292
Teacher spread0.272 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it