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Record W4386788224 · doi:10.58837/chula.the.2022.29

Identification and application in plant of plant growth-promoting endophytic bacteria

2022· dissertation· en· W4386788224 on OpenAlexaff
Kanchana Sitlaothaworn

Bibliographic record

Venuenot available
Typedissertation
Languageen
FieldAgricultural and Biological Sciences
TopicPlant-Microbe Interactions and Immunity
Canadian institutionsNutrasource
FundersChulalongkorn University
KeywordsBiology16S ribosomal RNAMicrobiologyPantoeaEnterobacterBacteriaProteobacteriaBotanyEscherichia coliGeneGenetics

Abstract

fetched live from OpenAlex

Seventy-eight endophytic bacteria isolated from 15 plant samples in Thailand including 50 isolates from sugarcane root samples obtained from 6 Provinces and 28 isolates from stems and leaves of healthy plants in Kanchanaburi Province, were identified and evaluated for plant growth promoting capability using rice as a plant model. They were identified as Gluconacetobacter (37 isolates), Pantoea (14 isolates), Burkholderia (2 isolates), Pseudomonas (4 isolates), Priestia (4 isolates), Enterobacter (2 isolates), Acinetobacter (2 isolates), Novosphingobium (2 isolates), Curtobacterium (2 isolates), and each of Nguyenibacter, Aureimonas, Bacillus, Peribacillus, Sphingobium, Staphylococcus, Brevibacillus, Aneurinibacillus, and Pseudarthrobacter based on their phenotypic characteristics and 16S rRNA gene analyzes. According to the 16S rRNA gene phylogeny, strain Sx8-5T was a member of genus Novosphingobium and shared the highest sequence similarity to Novosphingobium barchaimii LL02T of 99.4% and other Novosphingobium species (<99.4%). The ANIb and ANIm values of whole genome comparison between strain Sx8-5T and seven closely related type strains were 72.33-82.14%, 83.82-87.38%, respectively, and the digital DNA-DNA hybridization (dDDH) values ranged from 21.0% to 28.6% when compared to the type strains of the member of Novosphingobium. Based on the results obtained, demonstrated that strain Sx8-5T represents a novel species of the genus Novosphingobium, the name Novosphingobium kaempferiae sp. nov. is proposed. Sixty-one strains were positive in fixing nitrogen through nitrogenase activity by converting of N2 in the air to ammonia, which was supported by nif genes found in the genome of G. dulcium PS25. Sixty-nine strains were able to solubilize tricalcium phosphate (SI=1.18-4.4) and 72 strains were able to solubilize zinc oxide (SI=1.59-5.6). Sixteen strains could produce IAA (6.13 to 202.25 ?g/mL) in NF medium supplemented with 0.01% L-tryptophan, a main precursor for IAA biosynthesis. The maximum IAA produced by the Sphingobium sp. Sx8-8 increased to 232.1 ?g/mL at optimized conditions: pH 7, 30oC, 0.5% L-tryptophan and 48 h cultivation. In in vitro 2 rice varieties germination, the Sphingobium sp. Sx8-8 and Pantoea sp. S5-1 increased root length (4.83, 3.24 cm), shoot length (18.7, 13.75 cm) and number of lateral roots of rice ‘RD6' seedlings more than control and standard IAA, similar to Aureimonas sp. SK2, G. dulcium PS25 and G. liquefaciens LSG1 significantly increased root length (3.09-3.49 cm), shoot length (10.14-11.21 cm), number of lateral roots, and biomass of ‘Khao Dawk Mali 105' rice seedlings. This study indicated that endophytic bacteria could potentially promote plant growth and be utilized as bioinoculant or biofertilizers in agriculture.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.224
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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